HsaEX0011603 @ hg19
Exon Skipping
Gene
ENSG00000160401 | C9orf117
Description
chromosome 9 open reading frame 117 [Source:HGNC Symbol;Acc:27843]
Coordinates
chr9:130474478-130476302:+
Coord C1 exon
chr9:130474478-130475154
Coord A exon
chr9:130475299-130475485
Coord C2 exon
chr9:130476113-130476302
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCTCGGCCCCCTCCCCACAGCCG
3' ss Score
11.01
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCAAGGGGAGGGGGAGTGAGCGCAAGATGGAAGCTGCTTGCAGAGAAGGGGCTGCCTCAGGATCAGAGGCCCCTCTTTTCCCTGAGAGACTCCTGGAAAGTCTGTCCTTCGCTGATTCTGGCCTTCAAAGATCCCTCCAAGGTCTTAAAGGAGCTGGATTCCTTCTCTGAGGCTCTGAAAGGTCTTGGGCCTCAGTCTTCCCGACTGAAGAATGGGTATCCCACCACAGACAGGGAAAACTTCGTGGAAATGGGCACTGAGGTTGGAATTTCCTGGACGAGGGTGGGTACTGGGGCCACTGTGGGCCTGCTGCCACCCCACCCTCACCAACAGATGCACCGCGATGAAGAGGACAGTGACGTTGACGTGACGTTCCAGCCATGGCACAAGGAGATGCTGCAGCAACTGCTGGTCATGCTCAGCTCCACTGTGGCCACGAGACCTCAGAAGGCTGCGTGTCCCCACCAGGAGTCACAGTCCCATGGCCCACCCAAGGAGAG
Seq A exon
CCGGCCCAGCATCCAGCTGCCCAGGACTGGGTCTCTGCTGCCGCAGCTCTCTGACATCACCCCCTACCAGCCGGGGGATCTAGGCCTGGTACCTCGCCAGGTCCACATCCCACCCAACCCCCAGGACCTCAGGCTGCTGTCATATATCACCCGTGTGGGGACCTTCCGGGCACACAGCAGCCCTGAG
Seq C2 exon
ATGCGTGCCCCTGGTTCTCTAAAAAGGCTTGAAAAGTTTAGTCTTCCTGAAGTTCCCCTACGTCCCAAGTAGGACACAGAGAGAAGAACCTACTCCAGAAATGGACTGGTCCAGTCACAGTCACCCCCACTTTAATCCGCAGGCAGCCTGGAACAGTCTAGAGGAGATTTGTATAAAAAGTAGATACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160401-'7-11,'7-9,8-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.497 A=0.571 C2=0.957
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTCACCAACAGATGCAC
R:
GGACGTAGGGGAACTTCAGGA
Band lengths:
247-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)