HsaEX0011603 @ hg38
Exon Skipping
Gene
ENSG00000160401 | CFAP157
Description
cilia and flagella associated protein 157 [Source:HGNC Symbol;Acc:HGNC:27843]
Coordinates
chr9:127712199-127714023:+
Coord C1 exon
chr9:127712199-127712875
Coord A exon
chr9:127713020-127713206
Coord C2 exon
chr9:127713834-127714023
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCTCGGCCCCCTCCCCACAGCCG
3' ss Score
11.01
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCAAGGGGAGGGGGAGTGAGCGCAAGATGGAAGCTGCTTGCAGAGAAGGGGCTGCCTCAGGATCAGAGGCCCCTCTTTTCCCTGAGAGACTCCTGGAAAGTCTGTCCTTCGCTGATTCTGGCCTTCAAAGATCCCTCCAAGGTCTTAAAGGAGCTGGATTCCTTCTCTGAGGCTCTGAAAGGTCTTGGGCCTCAGTCTTCCCGACTGAAGAATGGGTATCCCACCACAGACAGGGAAAACTTCGTGGAAATGGGCACTGAGGTTGGAATTTCCTGGACGAGGGTGGGTACTGGGGCCACTGTGGGCCTGCTGCCACCCCACCCTCACCAACAGATGCACCGCGATGAAGAGGACAGTGACGTTGACGTGACGTTCCAGCCATGGCACAAGGAGATGCTGCAGCAACTGCTGGTCATGCTCAGCTCCACTGTGGCCACGAGACCTCAGAAGGCTGCGTGTCCCCACCAGGAGTCACAGTCCCATGGCCCACCCAAGGAGAG
Seq A exon
CCGGCCCAGCATCCAGCTGCCCAGGACTGGGTCTCTGCTGCCGCAGCTCTCTGACATCACCCCCTACCAGCCGGGGGATCTAGGCCTGGTACCTCGCCAGGTCCACATCCCACCCAACCCCCAGGACCTCAGGCTGCTGTCATATATCACCCGTGTGGGGACCTTCCGGGCACACAGCAGCCCTGAG
Seq C2 exon
ATGCGTGCCCCTGGTTCTCTAAAAAGGCTTGAAAAGTTTAGTCTTCCTGAAGTTCCCCTACGTCCCAAGTAGGACACAGAGAGAAGAACCTACTCCAGAAATGGACTGGTCCAGTCACAGTCACCCCCACTTTAATCCGCAGGCAGCCTGGAACAGTCTAGAGGAGATTTGTATAAAAAGTAGATACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160401-'11-18,'11-15,12-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.232 A=0.667 C2=0.957
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTCACCAACAGATGCAC
R:
GGACGTAGGGGAACTTCAGGA
Band lengths:
247-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development