MmuEX0000445 @ mm10
Exon Skipping
Gene
ENSMUSG00000038987 | Cfap157
Description
cilia and flagella associated protein 157 [Source:MGI Symbol;Acc:MGI:2447809]
Coordinates
chr2:32777381-32778283:-
Coord C1 exon
chr2:32778117-32778283
Coord A exon
chr2:32777828-32778017
Coord C2 exon
chr2:32777381-32777569
Length
190 bp
Sequences
Splice sites
3' ss Seq
CCCTGGATCCCTCTCCACAGCCA
3' ss Score
8.61
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGCAAACAGAGGCGGAGGACGGCGACTTTGATGTGGTGTTCCAACTGCAGCGCAAGGAGCTGCTGCAGCAACTGCTGGTATTGCTCAGCTCAGGGGTGGTTTTGAAAACACAGCCGGACATGGGTTCCCACCAGGACAAGCAGCCCCAGGGCCTATCCAAAGAAAG
Seq A exon
CCAACGCATCACCCAGACATCCAAGGAAGGGGCTGTTTCTCTGCTGCAGCAGCTCTCGACCATCACAACCTATAAGCCAGGGGATCTTGGGCTGGTGCCTCGACGTCCGGTCCGCATCCCACTCAAACCCCAGGATCTCAGGCCCCTCTCCTATATCACCCGAATGGGGATCTGCCAGAACACGAATGAG
Seq C2 exon
ATCTACCCATCTGGAGCTCTCAAAAGGTTCAGAAAGTTTACCCTTCCTAGACCTTTCCTACACCGCAAATAGCGAACGGGGAGACCAAGCTGCTGCAGAAACAGACTGATGTGGCCACAGTCCCTCCTTGAATCTGCAAGTAGCCTGGGGAAACCCAGGGAAGTTATATAAACATTGGGTACCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038987-'13-8,'13-7,14-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.357 A=0.109 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTATTGCTCAGCTCAGG
R:
TCCCCAGGCTACTTGCAGATT
Band lengths:
244-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types