RnoEX6016490 @ rn6
Exon Skipping
Gene
ENSRNOG00000039315 | Cfap157
Description
cilia and flagella associated protein 157 [Source:RGD Symbol;Acc:1560002]
Coordinates
chr3:11813575-11814473:-
Coord C1 exon
chr3:11814307-11814473
Coord A exon
chr3:11813978-11814176
Coord C2 exon
chr3:11813575-11813746
Length
199 bp
Sequences
Splice sites
3' ss Seq
CCTGGGTCCCCTCTCCACAGCCG
3' ss Score
9.81
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGCGACCAGAGACAGAAGATGGTGACTTCGACGTGGTGTTCCAACTGCAGCGCAAGGAGCTGCTGCAGCAACTGCTGGTTTTGCTCAGCTCAGCTGTGGTTTCGAAACCACAGCAGGACATGGGCTCCCACCAGGACAAGCAGCCCGCGGGCCTATCCAAAGACAG
Seq A exon
CCGACTCATCGCCCAGACATCCAAGCAAGGGGCTGCCTCTCTGCTTCAGCAGCTCTCAACCATCACAACTTACCAGCCAGGGGACCTCGGGCTGGTGCCTCGACGTCTTCAGGTCCACATCCCACCCAAACCCCAGGACCTCAGGCCTCTCTCTTGTGTCACCCGAATGGGGATCTGCAAGTTACAGAACACTACTGAG
Seq C2 exon
ATCTACCCATCTGGAGCTCTCAAAAGGTTCAAAAAGTTTACCCTTCCTAGACCTTTCCTACACACGGGGAGACCAAGTCGCTGCAGAAAGCCTGATGTGGCCCCTGTCCCTCCCTGAATCTGCAAGTGGCCTGGGACAACCCAGAGAAGTTCCATAAACATTGGGTACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039315-'13-13,'13-10,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=0.224 C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACCAGAGACAGAAGATGG
R:
CTTTCTGCAGCGACTTGGTCT
Band lengths:
255-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]