MmuINT1006870 @ mm10
Intron Retention
Gene
ENSMUSG00000038987 | Cfap157
Description
cilia and flagella associated protein 157 [Source:MGI Symbol;Acc:MGI:2447809]
Coordinates
chr2:32777381-32778017:-
Coord C1 exon
chr2:32777828-32778017
Coord A exon
chr2:32777570-32777827
Coord C2 exon
chr2:32777381-32777569
Length
258 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TCGTATCTTTAATCTTGCAGATC
3' ss Score
9.84
Exon sequences
Seq C1 exon
CCAACGCATCACCCAGACATCCAAGGAAGGGGCTGTTTCTCTGCTGCAGCAGCTCTCGACCATCACAACCTATAAGCCAGGGGATCTTGGGCTGGTGCCTCGACGTCCGGTCCGCATCCCACTCAAACCCCAGGATCTCAGGCCCCTCTCCTATATCACCCGAATGGGGATCTGCCAGAACACGAATGAG
Seq A exon
GTAGGGGTGCCAGGAACCCTAGGCACAGCAAGCTGACAGCTGTCCCTGGTTCTGCCAGGCTATAGTTGGGTAGCCTCAGGGATATGGTGGAATCTCTTTGCTCCTCCCCACCTAGAAAATGACCCAATGGAAAAAGGCTAAAGCATTATACCCATGATCCCTTAGGAATAGGGTTTGCCAGACCCTCTTGTCCCTACCCACTGGTGCCTAACCCCACAGGAAGCTTCCAATTTCAAGTTCGTATCTTTAATCTTGCAG
Seq C2 exon
ATCTACCCATCTGGAGCTCTCAAAAGGTTCAGAAAGTTTACCCTTCCTAGACCTTTCCTACACCGCAAATAGCGAACGGGGAGACCAAGCTGCTGCAGAAACAGACTGATGTGGCCACAGTCCCTCCTTGAATCTGCAAGTAGCCTGGGGAAACCCAGGGAAGTTATATAAACATTGGGTACCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038987:ENSMUST00000102813:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACCCAGACATCCAAGG
R:
GACTGTGGCCACATCAGTCTG
Band lengths:
307-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types