RnoINT0035057 @ rn6
Intron Retention
Gene
ENSRNOG00000039315 | Cfap157
Description
cilia and flagella associated protein 157 [Source:RGD Symbol;Acc:1560002]
Coordinates
chr3:11813575-11814176:-
Coord C1 exon
chr3:11813978-11814176
Coord A exon
chr3:11813747-11813977
Coord C2 exon
chr3:11813575-11813746
Length
231 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
AGTATCTTTTAATCTTACAGATC
3' ss Score
8.86
Exon sequences
Seq C1 exon
CCGACTCATCGCCCAGACATCCAAGCAAGGGGCTGCCTCTCTGCTTCAGCAGCTCTCAACCATCACAACTTACCAGCCAGGGGACCTCGGGCTGGTGCCTCGACGTCTTCAGGTCCACATCCCACCCAAACCCCAGGACCTCAGGCCTCTCTCTTGTGTCACCCGAATGGGGATCTGCAAGTTACAGAACACTACTGAG
Seq A exon
GTAGGGGTCCCAGGGCCCCTAGGGACAGCTGTCCCTGGTTCTGCCAGGCAATAGTTGGGTGACCTCAGGGATATGGAAGAGTCTCTTTGATCCTCCCCCCTATAAGATATCCCGATGGAAAAAGGCTAATACCTAGGAATATGGTTTGCCAGACCCTCTTGTTCCTACCCCACTGGCCCCGATTCCCTCAGAAAGCCTCCAATTTTAAGCCAGTATCTTTTAATCTTACAG
Seq C2 exon
ATCTACCCATCTGGAGCTCTCAAAAGGTTCAAAAAGTTTACCCTTCCTAGACCTTTCCTACACACGGGGAGACCAAGTCGCTGCAGAAAGCCTGATGTGGCCCCTGTCCCTCCCTGAATCTGCAAGTGGCCTGGGACAACCCAGAGAAGTTCCATAAACATTGGGTACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039315:ENSRNOT00000020660:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCGCCCAGACATCCAAG
R:
CATCAGGCTTTCTGCAGCGA
Band lengths:
292-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]