RnoEX0071642 @ rn6
Exon Skipping
Gene
ENSRNOG00000049034 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:RGD Symbol;Acc:1310165]
Coordinates
chr3:11812873-11825612:+
Coord C1 exon
chr3:11812873-11812972
Coord A exon
chr3:11816298-11816444
Coord C2 exon
chr3:11825426-11825612
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGCACAGACTTCTTCTCCAGGTT
3' ss Score
5.08
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CGGAGCTGTTTGGGCTGAGTGCGGAGGAGATCTACCTGGTGCATGACGAACTGGACAAACCCTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
Seq A exon
GTTGTACACGTAGTCCTTGTATTCACCCTCCTGCCTTCGAAGCTGTTCCTCCAGCGCCATGTACTTCTCTGTGAGCTCTTCTTTCTGCAGCCGGAACTCCTCCAGGGAACTCAGCTTGATTCCTGCCCATTCGGGGCCACAAGGCTG
Seq C2 exon
CTTCTTCAGCGTGTCCAGCAGTTTCTGTGGGGTGAGAATGTGCGTGGATCCTGGGAAGGCAGAGAAGACAGTAAGTTCACTCACCTATTGCAGCCTGAGACTTCTGTCCCCAACTCTCCATCCCCCCAACCCTGGTCTGGGTCCAGTGGAAGCTAGGAGGGGTTTGGGGATGGAACCCTTGGGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049034_MULTIEX1-4/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
A:
PF0119514=Pept_tRNA_hydro=PD(0.9=20.0)
C2:
PF0119514=Pept_tRNA_hydro=PD(0.9=1.6)
Main Inclusion Isoform:
ENSRNOT00000060258fB11672
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGTGCGGAGGAGATCTA
R:
CTAGCTTCCACTGGACCCAGA
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]