RnoINT0035055 @ rn6
Intron Retention
Gene
ENSRNOG00000039315 | Cfap157
Description
cilia and flagella associated protein 157 [Source:RGD Symbol;Acc:1560002]
Coordinates
chr3:11814307-11815105:-
Coord C1 exon
chr3:11814955-11815105
Coord A exon
chr3:11814474-11814954
Coord C2 exon
chr3:11814307-11814473
Length
481 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
3' ss Seq
GCCTCGTGTCACACCGACAGATG
3' ss Score
7.3
Exon sequences
Seq C1 exon
GAGCGAGAAAGACCAGCTGGACGAGCAGCTGAAGGAGCAGCGGGCAGAGGCAAATCGGCTACAAGAGGAGCTGACCAAGGAACAGAAAATTCGGACAAACCTTAAAACAGTGCTGACCCAGGCCACCTCCCTACTGCGGGACATTCTACAG
Seq A exon
GCAAGCAGGCAGTGGAAGATACCAAGAGGCCACTAGAGCCGAGCACAGAGAGGCTCACAGTTAGACCCCTTTTCTCATTCTGGATCTAAAAGAGTGGGTCTAATCCTACCAGGGACGGAAGAGGCAGAAGCAGGAGGATTCCGAATTCGAGACCTGATTGGGGTTACAGAATGAGTTCAAGGCCAGCCTGGGCAAATCAAGTGTCTTATAAAGTAAAAAAGGTGTGACAGTGCACACCTTTAATCCCTGGAAGGCAGTGGCAGGCAGAGGGAGGAACAGGAGAAAGGAAAGATTCCTTTCAAACTTCCAAAGAGTGGAATTTCTCTTCTAGGGCTCCGGAGAGCTCCAAGTCTTCCCAGTCCCAGCACAAACCAGGGGCACTGAGGAAGCAGGCACTGGGCACTGGAGAATCTCACACTGGGAGGCAGGTGGGTATCTGGGCCCCTGTGGTTATTTAACCCGCCTCGTGTCACACCGACAG
Seq C2 exon
ATGCGACCAGAGACAGAAGATGGTGACTTCGACGTGGTGTTCCAACTGCAGCGCAAGGAGCTGCTGCAGCAACTGCTGGTTTTGCTCAGCTCAGCTGTGGTTTCGAAACCACAGCAGGACATGGGCTCCCACCAGGACAAGCAGCCCGCGGGCCTATCCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039315:ENSRNOT00000020660:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=NA C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGAGAAAGACCAGCTGGA
R:
CTGTCTTTGGATAGGCCCGC
Band lengths:
318-799
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]