MmuINT0001103 @ mm10
Intron Retention
Gene
ENSMUSG00000038987 | Cfap157
Description
cilia and flagella associated protein 157 [Source:MGI Symbol;Acc:MGI:2447809]
Coordinates
chr2:32778117-32779097:-
Coord C1 exon
chr2:32778947-32779097
Coord A exon
chr2:32778284-32778946
Coord C2 exon
chr2:32778117-32778283
Length
663 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGC
5' ss Score
6.58
3' ss Seq
ACCTCACATCATACCAACAGATG
3' ss Score
7.02
Exon sequences
Seq C1 exon
GAGTGAGAAAGACCAGCTGGAAGCGCAACTGAAGGAGAAGCAGGCAGAGGCAAATCGGCTACAGGAGGAGCTGACCAAGGAACAGAAAATTCGGGCAAACCTTAAAACAGTCCTGATCCAGGCGACCTCCATGCTACAGGACATTGTGCAC
Seq A exon
GTAAGCAAACAGTGTGGGAGATACCAAGAGGCTGCCAGGGCAAATCGTAGAGGGCCTCTTTCTGGAGAGGCTGATGGCCAGACTCCTTTTCTCATTCTCGATCTAAATGAGTTGGGTCTAATCATAGCAGGGACTAAGGAGGGGGAAGCAGGAGGATTCCAAATTCAAGACCTGACTGGAGCTATAGAATGAGAAGGCCATAGTGGGCATCTCAAGTGTCTTATAAAATATAGAGGTGTGGCAGTGAACACCTTTAATCCCTGGGAGGCAGTGGCAGACAAAGGAAGAACAGAAGATTCCATTCAAAGCTCATAAGAAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTGGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCTAAAAACAAACAAACAAAAAAAAAAAAAACAAAACAAAAAAAAAAAACCTCCAAAGAGAGGGCTTCAAGCCTCAGTCTTCCCAGCCTGATAACTTGTGTTCCACCACAAACCAGGTGCACTGAGAAAGCAGGCCCTGGAGCGTCTCATGTGGAGGTGGGTGGGTATCTGGGCCCCTGTGGTGATTTAACCCACCTCACATCATACCAACAG
Seq C2 exon
ATGCAAACAGAGGCGGAGGACGGCGACTTTGATGTGGTGTTCCAACTGCAGCGCAAGGAGCTGCTGCAGCAACTGCTGGTATTGCTCAGCTCAGGGGTGGTTTTGAAAACACAGCCGGACATGGGTTCCCACCAGGACAAGCAGCCCCAGGGCCTATCCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038987:ENSMUST00000102813:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=NA C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAGAAAGACCAGCTGGA
R:
CTTTCTTTGGATAGGCCCTGGG
Band lengths:
318-981
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types