RnoEX0071640 @ rn6
Exon Skipping
Gene
ENSRNOG00000049034 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:RGD Symbol;Acc:1310165]
Coordinates
chr3:11812873-11825612:+
Coord C1 exon
chr3:11812873-11812972
Coord A exon
chr3:11813284-11813578
Coord C2 exon
chr3:11825426-11825612
Length
295 bp
Sequences
Splice sites
3' ss Seq
ATTCCCCTGGCACCCTACAGGCA
3' ss Score
6.37
5' ss Seq
GTGGTACCC
5' ss Score
2.31
Exon sequences
Seq C1 exon
CGGAGCTGTTTGGGCTGAGTGCGGAGGAGATCTACCTGGTGCATGACGAACTGGACAAACCCTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
Seq A exon
GCAATGCCAAGGCTGCTGGTGGGCATCGGGCGCCCCACACACCCTAATATGGTGGAGACCCATGTTCTGGGCTGCTTCTCCCCGGAGGAGCAGGAACTACTGTCCCCATTGATGGATCAGGCCACTGACCTGCTCCTGGACCACATCCGTGCTCGAAGCCAGGGACCACTGTCAGGCCTCTAATACCAGTGAATATATCTACCTGTTTGCTTGCCTGCCGGTGCCTGCCTGGTGGTGCCTGCCTGCCAGTGCCCTGAAGCCCAGACAGGACCACAGAACTGCAATGACACATGTG
Seq C2 exon
CTTCTTCAGCGTGTCCAGCAGTTTCTGTGGGGTGAGAATGTGCGTGGATCCTGGGAAGGCAGAGAAGACAGTAAGTTCACTCACCTATTGCAGCCTGAGACTTCTGTCCCCAACTCTCCATCCCCCCAACCCTGGTCTGGGTCCAGTGGAAGCTAGGAGGGGTTTGGGGATGGAACCCTTGGGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049034_MULTIEX1-2/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.149
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
A:
PF0119514=Pept_tRNA_hydro=PD(5.3=15.8)
C2:
PF0119514=Pept_tRNA_hydro=PD(0.9=1.6)
Main Inclusion Isoform:
ENSRNOT00000060258fB11670
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGTTTGGGCTGAGTG
R:
GGGTCCCAAGGGTTCCATCC
Band lengths:
286-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]