RnoALTA0031918-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000049034 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:RGD Symbol;Acc:1310165]
Coordinates
chr3:11812873-11813185:+
Coord C1 exon
chr3:11812873-11812972
Coord A exon
chr3:11813056-11813139
Coord C2 exon
chr3:11813140-11813185
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGTTGAGCCTCTCTCTATAGGCT
3' ss Score
7.71
Exon sequences
Seq C1 exon
CGGAGCTGTTTGGGCTGAGTGCGGAGGAGATCTACCTGGTGCATGACGAACTGGACAAACCCTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
Seq A exon
GCTGGGCTGATCTGAAGGAGGTCTGGGCAAGAGAGTGCTGCCTCAGGAAGTACTAACTGCTCCTCATATCCCCCCCCCCCCAAG
Seq C2 exon
GGGCCATAATGGAGTCCGTTCCTGCATTAGCTGTCTGAACTCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049034-2-6,2-5,2-4-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
A:
NA
C2:
PF0119514=Pept_tRNA_hydro=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGTTTGGGCTGAGTG
R:
TGGAGTTCAGACAGCTAATGCA
Band lengths:
143-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]