RnoALTA0031918-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000049034 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:RGD Symbol;Acc:1310165]
Coordinates
chr3:11812873-11813185:+
Coord C1 exon
chr3:11812873-11812972
Coord A exon
NA
Coord C2 exon
chr3:11813140-11813185
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CATATCCCCCCCCCCCCAAGGGG
3' ss Score
6.33
Exon sequences
Seq C1 exon
CGGAGCTGTTTGGGCTGAGTGCGGAGGAGATCTACCTGGTGCATGACGAACTGGACAAACCCTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
Seq A exon
NA
Seq C2 exon
GGGCCATAATGGAGTCCGTTCCTGCATTAGCTGTCTGAACTCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049034-2-6,2-5,2-4-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
A:
NA
C2:
PF0119514=Pept_tRNA_hydro=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGTTTGGGCTGAGTG
R:
TGGAGTTCAGACAGCTAATGCA
Band lengths:
143-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]