MmuALTA0014565-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000053746 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:MGI Symbol;Acc:MGI:1913779]
Coordinates
chr2:32776707-32777028:+
Coord C1 exon
chr2:32776707-32776806
Coord A exon
chr2:32776894-32776982
Coord C2 exon
chr2:32776983-32777028
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GAGACTATCTATCTCGATAGGCT
3' ss Score
6
Exon sequences
Seq C1 exon
CGGAGCTGTTTGGGCTGACTGCGGAGGAGATCTATCTGGTCCATGATGAACTGGACAAGCCGTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
Seq A exon
GCTGGGCTGCTCTGAAGAAGGCCTGGGCAAGGGAATGGAGGAAGGGCACTGCCTCAGAAAGTACTAACTGCTCTTCATATCCCCTCAAG
Seq C2 exon
GGGCCATAATGGAGTCCGTTCCTGCATTAGCTGTCTGAACTCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053746-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
A:
NA
C2:
PF0119514=Pept_tRNA_hydro=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGTTTGGGCTGACTG
R:
TGGAGTTCAGACAGCTAATGCA
Band lengths:
143-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types