RnoEX0020419 @ rn6
Exon Skipping
Gene
ENSRNOG00000039315 | Cfap157
Description
cilia and flagella associated protein 157 [Source:RGD Symbol;Acc:1560002]
Coordinates
chr3:11814307-11816419:-
Coord C1 exon
chr3:11816266-11816419
Coord A exon
chr3:11815226-11815356
Coord C2 exon
chr3:11814307-11814473
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATGCCTGCCCGCTGCTGTAGGTT
3' ss Score
7.86
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GAATCAAGCTGAGTTCCCTGGAGGAGTTCCGGCTGCAGAAAGAAGAGCTCACAGAGAAGTACATGGCGCTGGAGGAACAGCTTCGAAGGCAGGAGGGTGAATACAAGGACTACGTGTACAACCTGGAGAAGAAGTCTGTGCTGGACAAGGACAG
Seq A exon
GTTATCCTCATGCTGACAGAGAAGTGCCGCCAGCAGAGAAAGGGCACAGAGGAGGCAGAGCAACTGCGCCTCCAGCTGTTCCAACTGGAGCAGAACATCGAGACTCTGGAGAAGGCCAACCAGACCCTGCG
Seq C2 exon
ATGCGACCAGAGACAGAAGATGGTGACTTCGACGTGGTGTTCCAACTGCAGCGCAAGGAGCTGCTGCAGCAACTGCTGGTTTTGCTCAGCTCAGCTGTGGTTTCGAAACCACAGCAGGACATGGGCTCCCACCAGGACAAGCAGCCCGCGGGCCTATCCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039315_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.159 C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCGGCTGCAGAAAGAAG
R:
CATGTCCTGCTGTGGTTTCGA
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]