BtaEX6046266 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012735 | C9orf117
Description
chromosome 9 open reading frame 117 [Source:HGNC Symbol;Acc:HGNC:27843]
Coordinates
chr11:98404470-98405556:+
Coord C1 exon
chr11:98404470-98404737
Coord A exon
chr11:98405097-98405227
Coord C2 exon
chr11:98405406-98405556
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCCACCTGCCCACACTGCAGGTC
3' ss Score
6.01
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
ACTGAGAAAGGAGATCATCCAGCGTGTGAACATGGTGGCCACGGAGTTCCGCAAGGTGGCCACGAGCCAGATGTGGGACACAACCAAGCGGGCCATCACAGAGAACAACGCGGTGACCCTGCAGTTGGCCAAGATTACACGACAGGGCACGCAGCTGCTGGCGGAGAATGAGCAGCTCCGGGGCCACCAGGACGACCTGTGCAAACAGCTGGAGCTGCTGGAGAACTCCCAGAAGCTCATGGCCAGGAAAAGCCGGGGCCACCAGAAG
Seq A exon
GTCATCCTCATGCTGACGGAGAAGTGCCGCGAGCAGCAGCAGGGCATGGCTGAGGCCGAGCGGCTGCGCGTCCTGCTGGGCCAGCTGGAACAGGACCTCCTGAAGCAGCAGCAGGACAATCAGGCACTGAG
Seq C2 exon
GAACGAAAGAGACCAGCTGAACCTGCAGCTGGAGCGGCGGCAGGCCGAGGGGCAGCGGCTCCAGCAGCAGCTGAGCAAAGAGCAGGAGGTCCGGGCGAGCCTGGAGACAGCCCTGGCCCAGGCCACCTCCTTCCTACAGGACATCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012735-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.136 C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAGTTGGCCAAGATTA
R:
GACCTCCTGCTCTTTGCTCAG
Band lengths:
243-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]