RnoINT0035052 @ rn6
Intron Retention
Gene
ENSRNOG00000039315 | Cfap157
Description
cilia and flagella associated protein 157 [Source:RGD Symbol;Acc:1560002]
Coordinates
chr3:11815653-11816419:-
Coord C1 exon
chr3:11816266-11816419
Coord A exon
chr3:11815921-11816265
Coord C2 exon
chr3:11815653-11815920
Length
345 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
AAACCCACCCTCCTGGCAAGGCT
3' ss Score
-0.18
Exon sequences
Seq C1 exon
GAATCAAGCTGAGTTCCCTGGAGGAGTTCCGGCTGCAGAAAGAAGAGCTCACAGAGAAGTACATGGCGCTGGAGGAACAGCTTCGAAGGCAGGAGGGTGAATACAAGGACTACGTGTACAACCTGGAGAAGAAGTCTGTGCTGGACAAGGACAG
Seq A exon
GTAAGCAGGCTGGGGACCTGCTGGGGCCAGACAGCACCCCTCAGCTCACAGTCAGCTTTCCAGAAGGGAACCATGGACTCCCCAGTCTCTATCCCCCAGAACCCTGCTTGAGACCTATGGGGGTGGGGATCAAAGTACCCAGGTTGGCACTGGACACTCCTTGCCCTCTTGTCACTTCTCATTATGGTGTTTCTTCTACTAGGTAAGAATGTTTCAATGGTTCAAATTCCAAAGGCCCAGAGATTCTTTGGGGGAAGAGCCTGGGTACCCTGGGACCTCCCAAAAAGGGGGGTAACCAAGACTTACACCCACCTACTTGACTCCCAAACCCACCCTCCTGGCAAG
Seq C2 exon
GCTGAGGAAAGAGATCATCCAGCGCGTGAACCTGGTGGCCACCGAGTTCCGAAAGGTGGCCACCAACCAGATGTGGGAGACGACCAGGCGGGCCATCCTAGAGAACAACAACGTGACCCTGCAGCTGTCCAAGGTGTCAAAGCAAGGTGTGCAGCTGCTGCAGGAGAACGAGCAACTCAAGGGCGCTCAGGGCAAGCTGTGCCAACAGCTGGAGTTGCTGGAGAACACACAGGAGATCATGGCCAAAAAGAACATAGGGAATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039315:ENSRNOT00000020660:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAAGTACATGGCGCTGG
R:
TGGCCATGATCTCCTGTGTGT
Band lengths:
348-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]