RnoEX0020420 @ rn6
Exon Skipping
Gene
ENSRNOG00000039315 | Cfap157
Description
cilia and flagella associated protein 157 [Source:RGD Symbol;Acc:1560002]
Coordinates
chr3:11814307-11816419:-
Coord C1 exon
chr3:11816266-11816419
Coord A exon
chr3:11814955-11815105
Coord C2 exon
chr3:11814307-11814473
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTTGTCCTGGACCAGGAG
3' ss Score
5.94
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
Exon sequences
Seq C1 exon
GAATCAAGCTGAGTTCCCTGGAGGAGTTCCGGCTGCAGAAAGAAGAGCTCACAGAGAAGTACATGGCGCTGGAGGAACAGCTTCGAAGGCAGGAGGGTGAATACAAGGACTACGTGTACAACCTGGAGAAGAAGTCTGTGCTGGACAAGGACAG
Seq A exon
GAGCGAGAAAGACCAGCTGGACGAGCAGCTGAAGGAGCAGCGGGCAGAGGCAAATCGGCTACAAGAGGAGCTGACCAAGGAACAGAAAATTCGGACAAACCTTAAAACAGTGCTGACCCAGGCCACCTCCCTACTGCGGGACATTCTACAG
Seq C2 exon
ATGCGACCAGAGACAGAAGATGGTGACTTCGACGTGGTGTTCCAACTGCAGCGCAAGGAGCTGCTGCAGCAACTGCTGGTTTTGCTCAGCTCAGCTGTGGTTTCGAAACCACAGCAGGACATGGGCTCCCACCAGGACAAGCAGCCCGCGGGCCTATCCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039315_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.549 C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCGGCTGCAGAAAGAAG
R:
CATGTCCTGCTGTGGTTTCGA
Band lengths:
253-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]