DreEX6014253 @ danRer10
Exon Skipping
Gene
ENSDARG00000099042 | C5H9orf117
Description
chromosome 9 open reading frame 117 [Source:HGNC Symbol;Acc:HGNC:27843]
Coordinates
chr5:64477922-64478495:+
Coord C1 exon
chr5:64477922-64478052
Coord A exon
chr5:64478139-64478289
Coord C2 exon
chr5:64478359-64478495
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTACTCCCGCTGTATTACAGAAA
3' ss Score
7.45
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTGGTCCTTCAGTTGACAGAAAAGTGCAAGCAAATGCAGTCTGAAGTGGAGAAATGCACCAAACTGAAACAGGATCACCAGGAGCTGCTGGACATTCACTCTGCGGTTTGCACTGAGATTGAGGATCTCAG
Seq A exon
AAAGAAACATGCAGCGGTTACAGAAGACCTGAACCAAACCAAAGCTGAAGTCGAGAGACAAAAGAAAGAGCTTGAGGAGGAAAGCAGAATGAGAGCGCAGATAAACACGGTTCTGGAAGAAGCAGCTGTAGCTTTGAAGGAGGCCTTGAGG
Seq C2 exon
GACGTCCCAGAGGAGGAAGACTCTGAGCTGAAGGTCACCGTCAGACGAAGTCAGATGATGCAGAAGCTGCTGGCTGTTCTGGACGGCGCTGCAGCTTTGGGAAAAGGACCTGCTCTTACTGATTTAATGACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099042-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.627 C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCCTTCAGTTGACAGAA
R:
AGGTCCTTTTCCCAAAGCTGC
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]