MmuEX6100629 @ mm9
Exon Skipping
Gene
ENSMUSG00000038987 | 1700019L03Rik
Description
RIKEN cDNA 1700019L03 gene [Source:MGI Symbol;Acc:MGI:2447809]
Coordinates
chr2:32633637-32634940:-
Coord C1 exon
chr2:32634810-32634940
Coord A exon
chr2:32634467-32634617
Coord C2 exon
chr2:32633637-32633803
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTGTCCCGGAGCAGGAG
3' ss Score
3.97
5' ss Seq
CACGTAAGC
5' ss Score
6.58
Exon sequences
Seq C1 exon
ATTATCCTCATGCTGACCGAGAAGTGCCGCCAACAGAGAAAGGGCACAGAGGAGACGGAGCAACTGCGCCTCCTGCTGTCCCAACTGGAGCAGAACTTCCAGAATGTGCAGAGGGACAACCAGACCCTGAG
Seq A exon
GAGTGAGAAAGACCAGCTGGAAGCGCAACTGAAGGAGAAGCAGGCAGAGGCAAATCGGCTACAGGAGGAGCTGACCAAGGAACAGAAAATTCGGGCAAACCTTAAAACAGTCCTGATCCAGGCGACCTCCATGCTACAGGACATTGTGCAC
Seq C2 exon
ATGCAAACAGAGGCGGAGGACGGCGACTTTGATGTGGTGTTCCAACTGCAGCGCAAGGAGCTGCTGCAGCAACTGCTGGTATTGCTCAGCTCAGGGGTGGTTTTGAAAACACAGCCGGACATGGGTTCCCACCAGGACAAGCAGCCCCAGGGCCTATCCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038987-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.490 C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCATGCTGACCGAGAAGT
R:
CCATGTCCGGCTGTGTTTTCA
Band lengths:
251-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: