HsaINT0025321 @ hg38
Intron Retention
Gene
ENSG00000160401 | CFAP157
Description
cilia and flagella associated protein 157 [Source:HGNC Symbol;Acc:HGNC:27843]
Coordinates
chr9:127710601-127711496:+
Coord C1 exon
chr9:127710601-127710754
Coord A exon
chr9:127710755-127711228
Coord C2 exon
chr9:127711229-127711496
Length
474 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCTCCCACCTTTCTGGCCAGACT
3' ss Score
6.06
Exon sequences
Seq C1 exon
GGGGGAAGCTGGCAGCCCTGGAGGAGTTCCGGCTGCAGAAAGAGGAGGTCACGGACAAGTTCACATTGCTGGAGGAGCAGGTGCGGAAGCAGGAGAATGAGTTCAGGGACTATGCATACAACCTGGAGAAGAAGTCGGTGCTGGACAAGGACAG
Seq A exon
GTGGGCAAGCGGGGCACCCTTTGGGGCCTTTGGAGGCTTCATCCCTGGGGCTACGAACATCCTAGTCTTCAGGCCTCAGCTTCTAACTGGGGGGTTAGATGGGGAAACTGACCGCCGCCCCGACAACCTGCTACTCCTTGGAATCCCAGCTGGTGATTATGGAGGGGTGGGAGAAAAGGAATAAGCTCCCAGCTGCAGTCCTCACGCTGGCATTGGAGACTCCCAGGGCTTCCTTTTGCCACTTATTGGGATTAAATCATGTTACTTAACAGGTGGGAGTACATTGAAATGGTACCAATTACAAAGGTCCAGAGGATCTACAGGGAAAGCCTCCCACCCATAGCCCCAACCCTCCCAGGGAGAGAGCATGCTGGTGTTTAACAGCCCTAGGTGCTCTGGGAACCTCACAAAGGGGTGTGCCCAGGGCTTGTGCCCGCTCTGTCTGACCCCTTCCCCTCCCACCTTTCTGGCCAG
Seq C2 exon
ACTGAGGAAAGAGATCATCCAGCGCGTGAACCTCGTGGCCAATGAGTTCCACAAGGTGACCACGAACCGGATGTGGGAGACAACCAAGCGGGCCATCAAAGAGAACAACGGCATTACCCTGCAGATGGCCAGGGTCTCCCAGCAAGGCATGAAGCTGCTGCAGGAGAATGAGCAGCTCAAGGGAAGACAGAACAATCTGTGCAAACAGCTGGAGCTGCTGGAGAACACCCAGAAGGTCATGGCCAGGCACAAAAGAGGCCACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160401:ENST00000373295:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGTCACGGACAAGTTCA
R:
CTTCTGGGTGTTCTCCAGCAG
Band lengths:
347-821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development