RnoINT0035051 @ rn6
Intron Retention
Gene
ENSRNOG00000039315 | Cfap157
Description
cilia and flagella associated protein 157 [Source:RGD Symbol;Acc:1560002]
Coordinates
chr3:11816266-11817223:-
Coord C1 exon
chr3:11816952-11817223
Coord A exon
chr3:11816420-11816951
Coord C2 exon
chr3:11816266-11816419
Length
532 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TTGTGGCCCCGAATGGGCAGGAA
3' ss Score
2.7
Exon sequences
Seq C1 exon
GTATCAGCGGAAATGGGATGAACTGGCTGTGCAGGAGAAGCTGTTCCGTCAGGAGTTCGAGCAGCTGGCCAACAACAAGAAGGAGATCGTGGCCTTCCTCAAGCGCACACTGAACCAGAGGGTGGACGAGATCACGGACCTGAATGACCAGCTGCAGAGCCTACAAGTGGCCAAGGAGATGGAGAAGGATGCTTTCGAGGCCCAGTTGGCCCAGGTGCGCCACGAATTCCAGGAAACCAAGGACCAGCTCACCACAGAGAACATCGCCCTCG
Seq A exon
GTGAGGGGGCCAAGGGACCCGTCAGCACACCTGTGAGAAGTTGCCGTTAAAGGCAGCAAGGCCCAAATCCACAGCTGTCACTGGTTGTGGCCCGGCCTCGCCTGGGTATTGGGGACCCCATGGCTACCTTGGGTGATAGCAGCTGTACGCCACTTCAGACGCCATCCGTCTTAACTGTCCACGAATTCCCAAGTTTATAGATGAGGAAACCATTCTAAAAGATGGAGGATTTTTATCTATGCCGCCCATCTGAAAGGGAAGGTTGAGACTTGTCTGCCCAGGGTCAGCTGCTGTCGTCATGGTCACTCTCATGTGGGGAGGTTGTCAAGGGGGACTTCTTGAGGAGGATCTGAACGAGGTTTGGTGAGATTATAGAGTGTGAGGTCAGGCACTCCGGAGAAACGCAGGGGATGGCTGTGCAGGCCAGTCCTATTGGGGAAGGTGGCGAGGTAAGATAAAGTTGGGACCTCAGAGGAGTGTCAGTCAAGGCCCCCGGGGGCAGCTCACCAGCCTTGTGGCCCCGAATGGGCAG
Seq C2 exon
GAATCAAGCTGAGTTCCCTGGAGGAGTTCCGGCTGCAGAAAGAAGAGCTCACAGAGAAGTACATGGCGCTGGAGGAACAGCTTCGAAGGCAGGAGGGTGAATACAAGGACTACGTGTACAACCTGGAGAAGAAGTCTGTGCTGGACAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039315:ENSRNOT00000020660:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAGGAGATCGTGGCCT
R:
CTGTCCTTGTCCAGCACAGAC
Band lengths:
352-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]