HsaINT0025326 @ hg38
Intron Retention
Gene
ENSG00000160401 | CFAP157
Description
cilia and flagella associated protein 157 [Source:HGNC Symbol;Acc:HGNC:27843]
Coordinates
chr9:127713020-127714023:+
Coord C1 exon
chr9:127713020-127713206
Coord A exon
chr9:127713207-127713833
Coord C2 exon
chr9:127713834-127714023
Length
627 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CAGCATCTTTAATCTTACAGATG
3' ss Score
7.53
Exon sequences
Seq C1 exon
CCGGCCCAGCATCCAGCTGCCCAGGACTGGGTCTCTGCTGCCGCAGCTCTCTGACATCACCCCCTACCAGCCGGGGGATCTAGGCCTGGTACCTCGCCAGGTCCACATCCCACCCAACCCCCAGGACCTCAGGCTGCTGTCATATATCACCCGTGTGGGGACCTTCCGGGCACACAGCAGCCCTGAG
Seq A exon
GTGAGGGTGCCAGGGGCCCCAGGGAAAGCAAGGTGGCAGCTAGTCCTGGGTACAAACTGAGGCTCTGCCAGGCCACAGCTGTGTGGCCCTGGGGATGTAACCAGATCTCTCTGAGCCTTCCCATCTGTAAAATGGGCTGAAGAAAGGAGTGGCCAAGCCTCAATGGGCCAAAGCATGCCCACACATGCCCTGGGAGGGGGGTTGGCTGGACCCTGTTCTTCCCTCCCCCACCAGCAGGGAAAGAGTGGGATCCCCCTGAAGAGGCCTCAGCTTCCAAGCCAGCATCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCACCCAGACTGGAGTGCAGTGCCACAATCTCAGCTCACAGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGTCTCCCAAGTAGCAGGGATTACAGGCATGCACCACCATGCCTGGCTACTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACGTCAAGCAATCCCCCAGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACTGCACCCGGCCTCCAAGCCAGCATCTTTAATCTTACAG
Seq C2 exon
ATGCGTGCCCCTGGTTCTCTAAAAAGGCTTGAAAAGTTTAGTCTTCCTGAAGTTCCCCTACGTCCCAAGTAGGACACAGAGAGAAGAACCTACTCCAGAAATGGACTGGTCCAGTCACAGTCACCCCCACTTTAATCCGCAGGCAGCCTGGAACAGTCTAGAGGAGATTTGTATAAAAAGTAGATACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160401:ENST00000373295:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.957
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGCTGCCCAGGACTG
R:
TCTCCTCTAGACTGTTCCAGGC
Band lengths:
344-971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development