HsaALTD0001076-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000160401 | C9orf117
Description
chromosome 9 open reading frame 117 [Source:HGNC Symbol;Acc:27843]
Coordinates
chr9:130474099-130475154:+
Coord C1 exon
chr9:130474099-130474209
Coord A exon
NA
Coord C2 exon
chr9:130474478-130475154
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGAT
5' ss Score
3.56
3' ss Seq
TCATCCCAGTTGGGGTCCAGGAG
3' ss Score
-0.56
Exon sequences
Seq C1 exon
ATCATCCTCATGCTGACTAAGAAGTGCCAGGAGCAGCAGCAGGACACCAAGGAGGCCGAGGAGCTGCGCCTCCTGCTGAGCCAGTTGGAGCAGAGATCCCTGCAGCTGCAG
Seq A exon
NA
Seq C2 exon
GAGCCAGAGAGACCAGCTGAGCCTGCAGCTGGAGCAGCAGCAGGTGGATTTGCAGCGGCTACAGCAGGAACTGGCTAATGAGCAGAAGGTTCGGGCCAGCCTGGAGGCGGCTCTGGTCCAGGCCACCTCCTTCCTACAGAACATTCTGCAGGTGAGCAGAAGGGAGAGAGGGAGGGCGCAAGGGGAGGGGGAGTGAGCGCAAGATGGAAGCTGCTTGCAGAGAAGGGGCTGCCTCAGGATCAGAGGCCCCTCTTTTCCCTGAGAGACTCCTGGAAAGTCTGTCCTTCGCTGATTCTGGCCTTCAAAGATCCCTCCAAGGTCTTAAAGGAGCTGGATTCCTTCTCTGAGGCTCTGAAAGGTCTTGGGCCTCAGTCTTCCCGACTGAAGAATGGGTATCCCACCACAGACAGGGAAAACTTCGTGGAAATGGGCACTGAGGTTGGAATTTCCTGGACGAGGGTGGGTACTGGGGCCACTGTGGGCCTGCTGCCACCCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160401-4-5,5-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.497
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCAGTTGGAGCAGAGAT
R:
GCTCATTAGCCAGTTCCTGCT
Band lengths:
118-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)