HsaALTD0001076-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000160401 | CFAP157
Description
cilia and flagella associated protein 157 [Source:HGNC Symbol;Acc:HGNC:27843]
Coordinates
chr9:127711890-127712875:+
Coord C1 exon
chr9:127711890-127711930
Coord A exon
chr9:127711931-127711950
Coord C2 exon
chr9:127712199-127712875
Length
20 bp
Sequences
Splice sites
5' ss Seq
GAAGTGCGT
5' ss Score
4.88
3' ss Seq
TCATCCCAGTTGGGGTCCAGGAG
3' ss Score
-0.56
Exon sequences
Seq C1 exon
TCCTGCTGAGCCAGTTGGAGCAGAGATCCCTGCAGCTGCAG
Seq A exon
GTGGATAACCAGGCACTGAA
Seq C2 exon
GAGCCAGAGAGACCAGCTGAGCCTGCAGCTGGAGCAGCAGCAGGTGGATTTGCAGCGGCTACAGCAGGAACTGGCTAATGAGCAGAAGGTTCGGGCCAGCCTGGAGGCGGCTCTGGTCCAGGCCACCTCCTTCCTACAGAACATTCTGCAGGTGAGCAGAAGGGAGAGAGGGAGGGCGCAAGGGGAGGGGGAGTGAGCGCAAGATGGAAGCTGCTTGCAGAGAAGGGGCTGCCTCAGGATCAGAGGCCCCTCTTTTCCCTGAGAGACTCCTGGAAAGTCTGTCCTTCGCTGATTCTGGCCTTCAAAGATCCCTCCAAGGTCTTAAAGGAGCTGGATTCCTTCTCTGAGGCTCTGAAAGGTCTTGGGCCTCAGTCTTCCCGACTGAAGAATGGGTATCCCACCACAGACAGGGAAAACTTCGTGGAAATGGGCACTGAGGTTGGAATTTCCTGGACGAGGGTGGGTACTGGGGCCACTGTGGGCCTGCTGCCACCCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160401-8-10,9-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.232
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCAGTTGGAGCAGAGAT
R:
GCTCATTAGCCAGTTCCTGCT
Band lengths:
118-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development