HsaINT0025323 @ hg38
Intron Retention
Gene
ENSG00000160401 | CFAP157
Description
cilia and flagella associated protein 157 [Source:HGNC Symbol;Acc:HGNC:27843]
Coordinates
chr9:127711820-127712349:+
Coord C1 exon
chr9:127711820-127711950
Coord A exon
chr9:127711951-127712198
Coord C2 exon
chr9:127712199-127712349
Length
248 bp
Sequences
Splice sites
5' ss Seq
GAAGTGCGT
5' ss Score
4.88
3' ss Seq
TCATCCCAGTTGGGGTCCAGGAG
3' ss Score
-0.56
Exon sequences
Seq C1 exon
ATCATCCTCATGCTGACTAAGAAGTGCCAGGAGCAGCAGCAGGACACCAAGGAGGCCGAGGAGCTGCGCCTCCTGCTGAGCCAGTTGGAGCAGAGATCCCTGCAGCTGCAGGTGGATAACCAGGCACTGAA
Seq A exon
GTGCGTATGGCCCACGGAGGGGCGGGCGGCGGGTGCAGGCTGGGGCCAAGCTCTGGCCCAGCTCTTTCCGATCCCACGACCCAGGCCAGTGACTTCCCCTCTCTAGAGGAGCCTGCCAGACAGGCTGAGGCTTGGGGCGGGATGGGGGCCCCTGTGGGCTTGGAGAGAAATGGCAGGGCCCCTGGCCCCAGGTGGCCCCAGTCCTGGGGAAGGGGGAAGGCTGTTGACTCATCCCAGTTGGGGTCCAG
Seq C2 exon
GAGCCAGAGAGACCAGCTGAGCCTGCAGCTGGAGCAGCAGCAGGTGGATTTGCAGCGGCTACAGCAGGAACTGGCTAATGAGCAGAAGGTTCGGGCCAGCCTGGAGGCGGCTCTGGTCCAGGCCACCTCCTTCCTACAGAACATTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160401:ENST00000373295:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCTCATGCTGACTAAGAAGTG
R:
GAATGTTCTGTAGGAAGGAGGTGG
Band lengths:
276-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development