MmuALTD1025153-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000038987 | Cfap157
Description
cilia and flagella associated protein 157 [Source:MGI Symbol;Acc:MGI:2447809]
Coordinates
chr2:32778947-32779420:-
Coord C1 exon
chr2:32779290-32779420
Coord A exon
NA
Coord C2 exon
chr2:32778947-32779097
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCGAGC
5' ss Score
0.95
3' ss Seq
GCTGTTTTGTCCCGGAGCAGGAG
3' ss Score
3.97
Exon sequences
Seq C1 exon
ATTATCCTCATGCTGACCGAGAAGTGCCGCCAACAGAGAAAGGGCACAGAGGAGACGGAGCAACTGCGCCTCCTGCTGTCCCAACTGGAGCAGAACTTCCAGAATGTGCAGAGGGACAACCAGACCCTGAG
Seq A exon
NA
Seq C2 exon
GAGTGAGAAAGACCAGCTGGAAGCGCAACTGAAGGAGAAGCAGGCAGAGGCAAATCGGCTACAGGAGGAGCTGACCAAGGAACAGAAAATTCGGGCAAACCTTAAAACAGTCCTGATCCAGGCGACCTCCATGCTACAGGACATTGTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038987-9-5,10-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACTGGAGCAGAACTTCC
R:
ATTTGCCTCTGCCTGCTTCTC
Band lengths:
107-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types