HsaALTA0001381-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000160401 | CFAP157
Description
cilia and flagella associated protein 157 [Source:HGNC Symbol;Acc:HGNC:27843]
Coordinates
chr9:127709422-127710754:+
Coord C1 exon
chr9:127709422-127709693
Coord A exon
chr9:127710601-127710680
Coord C2 exon
chr9:127710681-127710754
Length
80 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
TTGTGCGCTGTGGCGGCCAGGGG
3' ss Score
4.03
Exon sequences
Seq C1 exon
GTACCAGCGGAAGTGGGATGAGCTGGCTGTGCAGGAGAAGATGTTCCGCCAGGAGTTTGAGCAGCTGGCCAATAACAAGAAGGAGATTGTGGCCTTCCTCAAGCGCACGCTCAACCAGCAGGTGGATGAGATCACAGACCTCAACGAGCAGCTCCAGAACTTGCAGCTAGCCAAAGAGATGGAGAAGGATGCCTTCGAGGCGCAGCTGGCCCAGGTGCGCCACGAGTTCCAGGAGACCAAGGACCAGCTCACCACGGAGAACATCATCCTTG
Seq A exon
GGGGGAAGCTGGCAGCCCTGGAGGAGTTCCGGCTGCAGAAAGAGGAGGTCACGGACAAGTTCACATTGCTGGAGGAGCAG
Seq C2 exon
GTGCGGAAGCAGGAGAATGAGTTCAGGGACTATGCATACAACCTGGAGAAGAAGTCGGTGCTGGACAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160401-3-4,3-3,3-2,3-1-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAACTTGCAGCTAGCCAA
R:
CAGCACCGACTTCTTCTCCAG
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains