HsaALTA0006865-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000187024 | PTRH1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:HGNC Symbol;Acc:HGNC:27039]
Coordinates
chr9:127714068-127714424:-
Coord C1 exon
chr9:127714379-127714424
Coord A exon
NA
Coord C2 exon
chr9:127714068-127714189
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GCTTCTCCCCTGCTGAGCAGGAG
3' ss Score
3.78
Exon sequences
Seq C1 exon
GGGCCACAATGGAGTCCGTTCCTGCATTAGCTGCCTCAACTCCAAT
Seq A exon
NA
Seq C2 exon
GAGCTGCTGCCTCTGTTGCTGGATCGAGCCACCGACCTGATCTTGGACCACATCCGTGAGCGAAGCCAGGGGCCCTCACTGGGGCCGTGACACTAGTGGCCATGGCTGCCTGCCTGACTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187024-9-16,9-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=PD(10.8=56.2)
A:
NA
C2:
PF0119514=Pept_tRNA_hydro=PD(4.7=19.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACAATGGAGTCCGTTC
R:
TACAGTCAGGCAGGCAGC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development