BtaEX6046271 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012736 | PTRH1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:27039]
Coordinates
chr11:98406893-98407619:-
Coord C1 exon
chr11:98407514-98407619
Coord A exon
chr11:98407326-98407371
Coord C2 exon
chr11:98406893-98407221
Length
46 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCCTATCCCTTGAAGGGG
3' ss Score
8.03
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GCCAAGTGGAGCTGTTTGGACTGACTGCTGAGGAAGTTTACCTGGTACACGATGAGCTGGACAAGCCGCTGGGGAAAGTGGCTCTGAAGCTGGGAGGAAGCGCCAG
Seq A exon
GGGCCACAATGGAGTCCGTTCCTGTATGAGCTGCCTCAACTCCAAT
Seq C2 exon
GCAATGCCACGGCTGCAGGTGGGCATCGGGCGGCCGACCCACCGGGACGCAGTGCAGGCCTATGTGCTGGGCCGCTTCTCCCCTGCTGAGCAGGAGCTGCTGCCTCCAGTGCTGGAGCGTGCTGTGGACCTGCTCCTGGGCCACATCCACCAGCGGAGCCGGGAGTCTTCATCAGGCCCCTGAGGCCGGTGGACTCGGCTGTTTGCCCGACTGTCATGCCCGCGCCCATCCACCCACCCACAGAGGTGCCACGCCAGCCTGTGGGGTCTTTTTTTTTTTTTAATGTAACTCTTCTCTGGGCTGCCCCAGGCTGCCTGTGGACTAACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012736-'3-10,'3-9,4-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(19.1=100)
A:
PF0119514=Pept_tRNA_hydro=FE(8.2=100)
C2:
PF0119514=Pept_tRNA_hydro=PD(31.1=93.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACACGATGAGCTGGACA
R:
CAGCACATAGGCCTGCACTG
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]