MmuEX0020825 @ mm9
Exon Skipping
Gene
ENSMUSG00000087283 | Gm13580
Description
predicted gene 13580 [Source:MGI Symbol;Acc:MGI:3650460]
Coordinates
chr2:60249904-60250636:+
Coord C1 exon
chr2:60249904-60250065
Coord A exon
chr2:60250222-60250288
Coord C2 exon
chr2:60250426-60250636
Length
67 bp
Sequences
Splice sites
3' ss Seq
GATTGCTTCCTGTGTCACAGAAA
3' ss Score
6.96
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
TCACCCTGCAGGCAGCATGTGCTGCTGATGAGAGCTCGGGATTGCAATCATGAATGGTCTTGGATTCCAATCCTGCCATGTGTCAGCTGTGTATCACCGACGACGACAACACAGAATGTTTCTGTCTTGCTTTTGTCATCTGTAAGATGACGTTCACAACAG
Seq A exon
AAACAGACTGTTTTCTGGGACAAGGGAGTGGAATACTTTGGCTGACTCTCGTTAAGCAGCTGCTGAG
Seq C2 exon
CACAGTCCCAGCGCTACCACGGCCCCAACAGAGTCAGCTGTACTCAAGACAGAGGAAGACGCCATGATGTCAACTGTACTGATGGATACCTAGGAATCTAAGATGAGGGCTGGGGAGATGGCTCAGGTGGCAAAGTCTTGCAAACATGAAGACCTGAGTTTGATTCCCAGAACCTGTGCAAAAATAAAAATGAAAATGAAACGGGAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087283_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACGACGACAACACAGAAT
R:
CTCCCCAGCCCTCATCTTAGA
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: