MmuEX0020825 @ mm10
Exon Skipping
Gene
ENSMUSG00000087283 | Gm13580
Description
predicted gene 13580 [Source:MGI Symbol;Acc:MGI:3650460]
Coordinates
chr2:60411847-60412579:+
Coord C1 exon
chr2:60411847-60412008
Coord A exon
chr2:60412165-60412231
Coord C2 exon
chr2:60412369-60412579
Length
67 bp
Sequences
Splice sites
3' ss Seq
GATTGCTTCCTGTGTCACAGAAA
3' ss Score
6.96
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
TCACCCTGCAGGCAGCATGTGCTGCTGATGAGAGCTCGGGATTGCAATCATGAATGGTCTTGGATTCCAATCCTGCCATGTGTCAGCTGTGTATCACCGACGACGACAACACAGAATGTTTCTGTCTTGCTTTTGTCATCTGTAAGATGACGTTCACAACAG
Seq A exon
AAACAGACTGTTTTCTGGGACAAGGGAGTGGAATACTTTGGCTGACTCTCGTTAAGCAGCTGCTGAG
Seq C2 exon
CACAGTCCCAGCGCTACCACGGCCCCAACAGAGTCAGCTGTACTCAAGACAGAGGAAGACGCCATGATGTCAACTGTACTGATGGATACCTAGGAATCTAAGATGAGGGCTGGGGAGATGGCTCAGGTGGCAAAGTCTTGCAAACATGAAGACCTGAGTTTGATTCCCAGAACCTGTGCAAAAATAAAAATGAAAATGAAACGGGAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087283_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACGACGACAACACAGAAT
R:
CTCCCCAGCCCTCATCTTAGA
Band lengths:
183-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types