MmuEX0039197 @ mm9
Exon Skipping
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60596861-60600203:-
Coord C1 exon
chr2:60600110-60600203
Coord A exon
chr2:60597816-60597863
Coord C2 exon
chr2:60596861-60596911
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTAACTTTGGTCTGCCTTAGGTG
3' ss Score
9.56
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTTATCCTTCACCATACAGTATTGCCACAAACCGAATGATCACTCAAACTTCTCTTACACCCTATATTGCATCTCCTGTATCTGCCTACCAG
Seq A exon
GTGGCAAAGGAAACCAGAGAGAACAAGTATCGGGGCTCTGCTATCAAG
Seq C2 exon
GTGCAGAGCCCCTCTTGGATGCAGCCTCAGCCGTACATTCTGCAGCATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.625 C2=0.092
Domain overlap (PFAM):
C1:
PF072716=Cytadhesin_P30=FE(23.7=100)
A:
NO
C2:
PF072716=Cytadhesin_P30=FE(12.2=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACCATACAGTATTGCCACA
R:
CTGCAGAATGTACGGCTGAGG
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: