RnoEX0074748 @ rn6
Exon Skipping
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46809584-46812870:-
Coord C1 exon
chr3:46812777-46812870
Coord A exon
chr3:46810524-46810571
Coord C2 exon
chr3:46809584-46809634
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTAACTTTGGTCTGCCTTAGGTG
3' ss Score
9.56
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTTATCCTTCACCATACAGTATTGCCACAAACCGAATGATCACTCAAACTTCTCTTACACCCTATATTGCATCTCCTGTATCTGCCTACCAG
Seq A exon
GTGGCAAAGGAAACCAGAGAGAAAAAGTATCGGGGCCCTGCTCTCAAG
Seq C2 exon
GTGCAGAGTCCTTCCTGGATGCAGCCTCAACCATACATTCTGCAGCATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.688 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACAGTATTGCCACAAACCG
R:
AGGATGCTGCAGAATGTATGGT
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]