RnoINT0125319 @ rn6
Intron Retention
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46809584-46812870:-
Coord C1 exon
chr3:46812777-46812870
Coord A exon
chr3:46809635-46812776
Coord C2 exon
chr3:46809584-46809634
Length
3142 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TGAAATCCTCCCTTTTCTAGGTG
3' ss Score
11.55
Exon sequences
Seq C1 exon
ATTTTATCCTTCACCATACAGTATTGCCACAAACCGAATGATCACTCAAACTTCTCTTACACCCTATATTGCATCTCCTGTATCTGCCTACCAG
Seq A exon
GTTTGTACCTCAGGACTCGTCAGCAGTGCGCCATGCATCTCTGCTGAATTTTTATGTGTCTTCAGATTCTGAACAGTTTTAAAATGAAATCTAAGTCAAATTGGATGCAGCTTGGATACCTAGTTTGGAATAAGCTGCCTTTTGTTTGGCATAGGGATTAGGTAAAGCCAGGGAAGTGATTGGAATCATCACATGGTTCTAGGATCGGGATAAACCCTTGTACTTGTCCCAGAAGTTGAATCTTTGTGAGAGTCACAAAATGGAGAGTGAGTGGGGGCTCCTGTCTTCGTTTCTTCACTAGCAGGAAGAGATAAGAGGAACGCAGAGATTGTCTCTATTAGATTAGGCAACGTGAACTGATACAGTTGAGATCTGAGGTCCTTCCCCAACCGAGGAGCAAGAGGCCGTTAACTCCTCTTCCTTTGTGAGGGGGCTTTGCCTTCAACCAGGAATGAACCCTCGCTAAGCTCCTTGTCCAACACTAATCTGATCATATGGCAGAGCTAGCAAGGCAAGTGCGCCTTTCTCCTCCTGTAGCAACGTCTTCCTCACAATGATGTATGGCCTGGGCCCAGACAGGAACACTGTCACTGAGTTCAGTTACTGACCTGCAAGAGAGGTCTCTTCCGTTGACTGCTGGGATCTTGCGTGACTAAACTCTGGGATATTGTTGTTTTTAAAACTGAATTAGATGTTGTAGTCCTGATGTCAGGGGTTAGGGGACTGCAGCATCTGATCTAACAGCTATGTTGATAGTGACATGCCTCAGTTTCCTCTTCTTTAAAATGGGGATAATAATGGCTTCTACTTTATAAACTAGAGAGGGTTCTGGGCATCTAACAAAGTTAAAAATAGCTCCACCCAGTACTGACATATCACTAATAGTAATCATGTGATAGCATTAGTAATCATGTAATCATGTGATAGCATTACATGTTAATTACACTTTTTCAATAATGGCCAAGGTAAGACAATGTCAAAGTTGACTCTGCACAAAAGTTATGAAAATAGCGGTGAATAAGAGGAGGGAGTGTCTACTGAGAGCAGAGTCTCACAGCATGGCCACCACCTTCACACTTCAGCTTCCCCCCCTCTCCCAGCCTTCACGCCTTTCCTTTCCTGTCTTCTCCCTGAGTTGTTACCTAACTCTGAAGTGTCAGTCTTCTGGGCACACTCTTCATTTATCCGTGTCTCTTCCACTGTTTTAAGAGTTGAGATTTTTTTTATCTTCTTGTTTCCCAGTGAGAGCAAGTGGATATAGTACATTTCCCCCCATAACCAGTGTCCGTAGCTGATATTAAAATGTAGTCTTTGATGACCTGAAAACGACAGCTGGTCATTTCTGTATCATTAAAAATAAGGTCCAGTACAAGCTCCCGTAAGCAAATGAAGACTATCGCCATGTTGCTGTAGGTACGACAGCTCTTAACCCATCTGTCACCACTTATTTTCCCTCTTTTAAGCTCGTTTTACCTGTCAACCGATTTATAGAATAAAAAGTCAGGAGGCCGGAGTTGGGAACTGACTGGACATGGCTAACTGTAGACAGCCTGTCGTTTCGAGGCTTCCTTTCCTCCTTGGAGAATTCTGTGGTTTTGTAAGACCCATGTGGAATTTACTCCATCTGCCTGACGGTCAGAGGCGTAACCTCTTGGTCAGTGCTCAGCAGAGGTCAGGGCATGAGCCCCAAGTGATCTGAGGTCCCTTTAAGTTGTGTGCAAAAAAATGTTATCTATGTGCGCTTAGTTTGGGATGGGGGTTCTGTTTCTTTCGGGTTTTCGAAGAAGCAATGGTAAGAAGTTAATAGATTATTATTCCCATTTTATAACTAGGGAACGTTGAGGAACAGAAACGGACAGTGGCTACTTTGCTGCTAAAAGACAAACACGGGATTAGATGTCATAGCTCCCTAACCTTGTAATACTCTTAAGTGCGTAGGCAATCATGGCCACAGAAACATACAGAAGCGGGGACATCTGGCCCAAATCGGGGTTTTCCGGGAGCTCCATGCCTCTCGTGATGTGTCCATAAGGGCCCACACTCGTGATAGAGTTGGCCTTCTCCACTAAACCACCATATGCTTATGCAGTTGGATTGAGAAAGTGGCATCTTCGAGAACCCACCAGTACCCCAGTGGGGAAAGGCTGCAGTCCAGATTACTGAAATGCTAACAAGGCAGAAGCACTTAACTTTGGTCTGCCTTAGGTGGCAAAGGAAACCAGAGAGAAAAAGTATCGGGGCCCTGCTCTCAAGGTAAATCGCGCTACCTTCTTTCCCCATGACTCTTCCCCGTATTCTCTCTGTAGCATCTCTGAAGTTTAACACTCAGGGACAGGACGCAGGAGGGTGCTGATAAGAACTGGAAGTGGAAATGTGCCTTAAAATCCCATAGACCTTGAAAAGCTGTGGGCATCAAGATGCAGACTCAACTCCTGCGTGGCAGGACGGGCATTTCCTTCCCACCACCGGGCCCTGACCCTCACATCGTATTTCTCAGTTCAGAGGGTCACCGTGCCGATGCCCTTTTAACTTAACTATCGACCTCAAGATCTTCTACCTCCCGTTTGATGTCCTAGGTCTGCATTTCAGACATTCTTTTCCTCGATGACTAGAAATTGTTGAGGACTAGACAGAAATTCTATCTTACTTTCCTGATGATCGGAGATTGCGTTTGGTTTTGCTTAGTAAATAGTAAAACAGTCTGTGTGCACCGTGAGGGTTAGTGTCTAACTAAATGCTCTACGATTAATCCCCACCCGTCAGTATTCCTAAAACGTAGTTCATACCTTGATTATAACACTCTTCACTAATTTTGGTTGTTTACGTGTTTATTTCCTTGGCTTAGAACAGTATCTTTTCAAGGGTGAAGCCCACCCGTGCCTTGCTCCCTGGTGCCTAATGTCCAGTAAATACGCACTGAGTGCACAAGAGACATTGGTTCCGAATGATTGTTTCCTTTCTCTTAGAGTGAGCAGTTTGTCAAGAGTTCTAACTGCCTTAACCTTCATAATTGTTAGTATTGTCTCTCTCTTTATCTTCCTTCTGTAGATTTTTTTAACACGATTTTAAAAAGAATTCTAGAGAGTTAAGATTCTTTTTGCAGTAGAAATCAATGTTTCTTTTGAAATCCTCCCTTTTCTAG
Seq C2 exon
GTGCAGAGTCCTTCCTGGATGCAGCCTCAACCATACATTCTGCAGCATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482:ENSRNOT00000011682:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]