DreINT0125513 @ danRer10
Intron Retention
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25830807-25832671:+
Coord C1 exon
chr23:25830807-25830900
Coord A exon
chr23:25830901-25832620
Coord C2 exon
chr23:25832621-25832671
Length
1720 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
GTGTCTCCTCTGGATTTTAGGTA
3' ss Score
9.4
Exon sequences
Seq C1 exon
GTTTTACTCTCCTTCCTACAGCATCGCTCCGAACAGAATTATTGCTCAGACTTCTATTTCTCCCTACATGCACTCGCCTGTATCCACATACCAG
Seq A exon
GTACACTTTCTTTATGTATGTTTCTTTACTAAACGTGTAGATTTAAACAGTTCGGGCAAAATTGAAACTCATTTATTTATTATTTCTTTACCTTGTGTAATCACAGACAGAACAACAGTTACAAAATAAAGCTTTAATTAAAAAAAATTAAATAAAAAATCTAACTACCAGAAATTTAGTCAATATAACTCAGCTCATGTTTGATGTTTCACACTTTGATTATATAACATAACTCTTTGATATTTAAGTTATTTATTAAAATATTGATACCCACCCTTCTTCTTAAAGCGAAAGTCCATTAAAATTCTGCAATCTTTTACTTCTAAACTGGAGTTTGTTGTTGTTGTTGTTTTTAACACAAAAAAAGGTTTTGAAGAAGGTTGGAAACCTATAACCACTGACATTGGTACACTGTAAAAAAATCTTGCTGCCAAAAATTTTCTAGTTTAATCAAGCAAACTTTGCTAGTCATCTTAACTCACATCAGTCAAACTGACTACAAATATTAAGTTGAAACCTGATTAGATTAAAATTAGGGCTGGCAATTCATCGAAAAGTAATTAAAATACATTCAGAACCTAAAGTTTATCTAATTTAGATAAATTACTTACCGTACTGCTTGTGAAGTCACATGACCCCGCTCTGTTGAGGCTGATTTATACTTCTGCGTCAAATGCACAGGTATGATCTGGTGCAGCCTTCACATGGTTGCATACCAGCACACATCTCAAAAAATGTAGCTACATGTCGCACGTCTGCACCACTATACATTGACGTTGACTGGATGCTGCGCCAGAGATGCCTTAAGATGGCATGTTTTCCATTACAATTAAATTATTATTTACATTAAAATCTTTGTTTACAGAATATGCAATAAATGCAGTTTAAAAAATATTTACTGGATATACAGGAGTTATTTTATTTTGAAGAGACATTGCTTATTTGAATGTAAAAAATTTGAAAACAATTTATTTATTTGTTTCCAAAAGTGCAAGCTATTTATTTACATTTTTTATAAGAACAGAGTGACTTTTGGTTTTAGACAAAGTGTTTCGATTGTTCAACATTGATGTTCAATAAATAATCATAAATAGTAGACAGTGTGTGTTTCCTTCAATCATTTTAAAATCAATAACGCACCCTTCATTCAAAAAATTCTCACTTGTAATATGTGAGCATATTTAGTCCAAAACTTGTCATTGAACTATGAGGGTAAGAAAATGTAATAAATACATAATAAATTTGTTCATTAATTGTAATCTAGTTAAAACGTTCAATTAATCGTGATTTTGATTTTAGGCCAAATCATCCAGCCCTAATTAAAATATCATAAAGTAACATAAAAACATTTATTGTTATGACTTTTTGTCATATTCTTTTACAATGTAGTAGCAAAAAAATACTATGGATGTCAATAGTTATAGGTTTTCACCACTGTTCAAAATAGCTTCAATCATGTTTCCATGACAGTTTTTGAAGGAACTGTCACTTTAAGACTAAATATATTTATCTAAATGGTATATAATACAGCTTAAAGTGTTTGGTTTTTTATGCATATACAAAGTTATGCAAAACAAATATGCAAAGACAATTATAACACACACAAGTTTTGGAGTGAAATGTGCAGAAACCTGATTAGAATTAATCTTTCTATTTTTGTTTTTGCACATAAAAATGAAGTATTCTTTGGTCTTAATCAAGTGTCTCCTCTGGATTTTAG
Seq C2 exon
GTACACAATCCCTCCTGGATACATCACCAGTCTTACCTCATGCAGCCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150:ENSDART00000060059:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]