MmuINT0132941 @ mm10
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128134997-128137567:-
Coord C1 exon
chr10:128137474-128137567
Coord A exon
chr10:128135108-128137473
Coord C2 exon
chr10:128134997-128135107
Length
2366 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCTTCATTGCCTTCTCTAGGGC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GTTCTACGCAGCTCCTTACAGTATCGCCCACAGCAGGATGCTTGCTCAATCTGCGCTAGCCCCGTATCTTCCATCTCCTGTGTCTTCCTATCAG
Seq A exon
GTGAGGTGTGAGGCTTTTCCTACTGTGTGTGTTAAGTGAACGAATGTAAAGCTTTTCTATATAGTACACACAAAGAAATGGTATGTTGGAGCATAACATGTGATTTTTATGTGTGTGTATATATATATATATATATATATATATATGTGTATATATATATATATATATGTATATGTGTGTGTGTATATATAGATGTATATGTGTGTGTGTAATATATAATATATAATAATATATATTATTCCTGTATGTGTATATACATATATACCCATGCATACAGTGCATATAAACACTTTTAGAGATAGAAACATCCTCTTGAGCTGGGCATGGTGGTACACACCTCTAATCCCAGCATTTGGGAGGCAGAGGCAGTTGGATCTTTGTGATTTTTTGAGGCCAGCCTGGGCTACATAGCAAGCTCCAGGACAACCAAGGCTATATAAGAGAGACCCTGTTTTAAAAAACCCACATCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCACAACCATCCGTAACACGAGATCTGACTCCCGCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATTAAATAAATAAATAAATAAATAAATAAATAAATAAATCTTTAAAAACAAAAAAACAAAAAACCCCACATCATCCTGCTTCTCTTTTTACCCTCATTGTAGATCACTTTCATGTGAGTAGATACTCAAATATTGGGGCCTTGGGAATCGTTTTGATAAAAATGTTTTTTGGTTTTGTTTTTGTTTTTGTTTTTTGAGACAGGGTTTCTCTGTATATCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTTTGGAGTGCTGGGATTAAAGGTGTTTGATAAAAATGTAACTTTATAGCCGGGCATGGTGGCACACACCTTTAATCCCAGCACTTGGGAGACAGAGGCAGGTAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTTTCGAAAAACAAAAACAAAACAAAACAAACAAACAAAAAAGTAATCTCATTTAATATATTTTGTTATTCTCACAACATCTTTTAAGCAGTCCTTTTACTTTATCTGTATGAGTGTTTCTTCTGGGAGAGCAGAACATGGTCTTAGCTGCTGTGTGTGTGTGTGTGTGCTCGCGCGTGCATATGTGTGTATGTGTGTAAAGGTCAGAAGGCAATTTATGGAAGGTTCTCTCCATTTACCTCGTGGGTTTTGGGGATCTAATTCAGGTCTTTAGATTTGGTAGCAAGTGCCTCTACCTGCTGAGATATTTCATCTACCCCTTTGCCTGTTTTTAACTGCGTTATCTGAGTTATAAGCTGCTAGTATTTGTTAACAGTGTGCTCTTTTAAAGTTTTTGAGACAGGGTCTCACTATGTAGCCCTGGCAAATCTGGAACTCTCTTTGTAGACCAGGCTAGCTTCAGATTGACAGATCTGCCTGCCTCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGTGCCACCACAGTCTGGCTAAGCGGTTTGTGCTCTGAAGGGACATGTCAGTTTGCGGGGGGCTTTGCTGAACAGTCTCATTCCTTGAGCCTAGGCAGTTAACATTTTTATTTGTCTTTGCTTATGTTAGAGAGTGACTCAGACATCTCCTCTACAAGTACCTAACCCATCTTGGATGCAATACCAGTTGTACTTCACGCAGCCTTCAGTGAGTGTTCAGAAGGGAAAGAGACAATCTGATGTAAAGCAAAGCAAAGGGTTTTGATGGCAGGATGTGTGGGTGTGAGCTCTGGCTCAGGCAGTAGGCGCACCAACAGTAACCTTAATTCTGTGGGTTTGTTAGTCTTAGACGTAGGTCCCTGCAGACTAAAGGTGAGGATGCTGTTGTTCCTGTTGTAGAACTCGGGTTAATTCTCAGGACTTGGAAATGTCAGCAGACGGTACTCTAGTTCCCGAATAGTTTGCTTCCTGATTCTAGTGCACTTAAACTGTTCTTAAAAAGCAAATCAAAGTCTGGGTGTAGAGACACAGGCCTTTAATCCCAGCACTTGGAAGGCAGCAGCAGGTGGATCTGCGAGTTCAAGGCCAGAGTGGTCTACAGAGTGAGTTCTGGGACAGCCAGGGTTAAACCTGTCAAGAGACACAAACAAGCAAAACAAAAACAAAACACTGGTGGCCCTGCTTGGCATCCTTGCCACTCAGGTGTCTTTACAGGAGGGTGCTGCTTAACCCTTCCCTTCATTGCCTTCTCTAG
Seq C2 exon
GGCTCAGTTCTGACACCAGGGATGGACCACCCCCTCTCTCTCCAGCCTGCCTCCATGATGGGACCTCTTACCCAGCAACTGGGTCACCTGTCACTCAACAGTCTGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043:ENSMUST00000099139:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.318
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types