MmuINT0132941 @ mm9
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127572053-127574623:-
Coord C1 exon
chr10:127574530-127574623
Coord A exon
chr10:127572164-127574529
Coord C2 exon
chr10:127572053-127572163
Length
2366 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCTTCATTGCCTTCTCTAGGGC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GTTCTACGCAGCTCCTTACAGTATCGCCCACAGCAGGATGCTTGCTCAATCTGCGCTAGCCCCGTATCTTCCATCTCCTGTGTCTTCCTATCAG
Seq A exon
GTGAGGTGTGAGGCTTTTCCTACTGTGTGTGTTAAGTGAACGAATGTAAAGCTTTTCTATATAGTACACACAAAGAAATGGTATGTTGGAGCATAACATGTGATTTTTATGTGTGTGTATATATATATATATATATATATATATATGTGTATATATATATATATATATGTATATGTGTGTGTGTATATATAGATGTATATGTGTGTGTGTAATATATAATATATAATAATATATATTATTCCTGTATGTGTATATACATATATACCCATGCATACAGTGCATATAAACACTTTTAGAGATAGAAACATCCTCTTGAGCTGGGCATGGTGGTACACACCTCTAATCCCAGCATTTGGGAGGCAGAGGCAGTTGGATCTTTGTGATTTTTTGAGGCCAGCCTGGGCTACATAGCAAGCTCCAGGACAACCAAGGCTATATAAGAGAGACCCTGTTTTAAAAAACCCACATCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCACAACCATCCGTAACACGAGATCTGACTCCCGCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATTAAATAAATAAATAAATAAATAAATAAATAAATAAATCTTTAAAAACAAAAAAACAAAAAACCCCACATCATCCTGCTTCTCTTTTTACCCTCATTGTAGATCACTTTCATGTGAGTAGATACTCAAATATTGGGGCCTTGGGAATCGTTTTGATAAAAATGTTTTTTGGTTTTGTTTTTGTTTTTGTTTTTTGAGACAGGGTTTCTCTGTATATCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTTTGGAGTGCTGGGATTAAAGGTGTTTGATAAAAATGTAACTTTATAGCCGGGCATGGTGGCACACACCTTTAATCCCAGCACTTGGGAGACAGAGGCAGGTAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTTTCGAAAAACAAAAACAAAACAAAACAAACAAACAAAAAAGTAATCTCATTTAATATATTTTGTTATTCTCACAACATCTTTTAAGCAGTCCTTTTACTTTATCTGTATGAGTGTTTCTTCTGGGAGAGCAGAACATGGTCTTAGCTGCTGTGTGTGTGTGTGTGTGCTCGCGCGTGCATATGTGTGTATGTGTGTAAAGGTCAGAAGGCAATTTATGGAAGGTTCTCTCCATTTACCTCGTGGGTTTTGGGGATCTAATTCAGGTCTTTAGATTTGGTAGCAAGTGCCTCTACCTGCTGAGATATTTCATCTACCCCTTTGCCTGTTTTTAACTGCGTTATCTGAGTTATAAGCTGCTAGTATTTGTTAACAGTGTGCTCTTTTAAAGTTTTTGAGACAGGGTCTCACTATGTAGCCCTGGCAAATCTGGAACTCTCTTTGTAGACCAGGCTAGCTTCAGATTGACAGATCTGCCTGCCTCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGTGCCACCACAGTCTGGCTAAGCGGTTTGTGCTCTGAAGGGACATGTCAGTTTGCGGGGGGCTTTGCTGAACAGTCTCATTCCTTGAGCCTAGGCAGTTAACATTTTTATTTGTCTTTGCTTATGTTAGAGAGTGACTCAGACATCTCCTCTACAAGTACCTAACCCATCTTGGATGCAATACCAGTTGTACTTCACGCAGCCTTCAGTGAGTGTTCAGAAGGGAAAGAGACAATCTGATGTAAAGCAAAGCAAAGGGTTTTGATGGCAGGATGTGTGGGTGTGAGCTCTGGCTCAGGCAGTAGGCGCACCAACAGTAACCTTAATTCTGTGGGTTTGTTAGTCTTAGACGTAGGTCCCTGCAGACTAAAGGTGAGGATGCTGTTGTTCCTGTTGTAGAACTCGGGTTAATTCTCAGGACTTGGAAATGTCAGCAGACGGTACTCTAGTTCCCGAATAGTTTGCTTCCTGATTCTAGTGCACTTAAACTGTTCTTAAAAAGCAAATCAAAGTCTGGGTGTAGAGACACAGGCCTTTAATCCCAGCACTTGGAAGGCAGCAGCAGGTGGATCTGCGAGTTCAAGGCCAGAGTGGTCTACAGAGTGAGTTCTGGGACAGCCAGGGTTAAACCTGTCAAGAGACACAAACAAGCAAAACAAAAACAAAACACTGGTGGCCCTGCTTGGCATCCTTGCCACTCAGGTGTCTTTACAGGAGGGTGCTGCTTAACCCTTCCCTTCATTGCCTTCTCTAG
Seq C2 exon
GGCTCAGTTCTGACACCAGGGATGGACCACCCCCTCTCTCTCCAGCCTGCCTCCATGATGGGACCTCTTACCCAGCAACTGGGTCACCTGTCACTCAACAGTCTGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-Rbms2:NM_001039080:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: