HsaINT0138677 @ hg19
Intron Retention
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif, single stranded interacting protein 2 [Source:HGNC Symbol;Acc:9909]
Coordinates
chr12:56975843-56980710:+
Coord C1 exon
chr12:56975843-56975936
Coord A exon
chr12:56975937-56980632
Coord C2 exon
chr12:56980633-56980710
Length
4696 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTGTTTTTGCTTGTTTTAGAGA
3' ss Score
9
Exon sequences
Seq C1 exon
GTTTTACCCAGCCCCCTATAACATCACCCCCAACAGGATGCTTGCTCAGTCTGCACTCTCCCCATACCTTTCCTCTCCTGTGTCTTCGTATCAG
Seq A exon
GTATGTTCATGCCTGAAAAATGGTGTGGTGGTTTTCCCTACTACTGTGCTTTAAGTGAAGTAATATAAGGCTAGGAACTACTTGTTTTTTGTTTTTCCTTTTAATCATATTACACACAATTTTACATAACAGCGTAAAAGATGATCTGTGCATGTGGTCATATATATGGTATACAGTTTTAATGGTGTCCTCTTACTCCCCCTCCACCACCTCCACAAGTAAACTCATGTTAATGTCCTACTGTGTAGCATTTGTCATATTTTTTCATATGAATACACATATGTATAGCATTTGGGGAGTTGTTTATTTTACAAAAATTGGACCAGATTAAATATATTTTTACATTCACTCATCTCACTTAACAGTATCCTACACCAGTGATTCTCAAAGTGTGGTCCCTGAACAAGCAGCATCAGCATCATCTGAGAATTTTTAGAAACAGAAATTTTGGACTACCCTCCAAATCTACTGAATTACAAACTCTGAGGATGGGGCCCAGTGATCTGGGCTTTTGTTTGTTTGTTTGTTTGTTTTAAGAGGGCGTCTCCCTCTGTTGCCCAGGCTGGAATGCAGTGGTGCAATCTCGGCTCACTGCAATCTCCGCCTCCTAGGTTCAGGCGATTCTCCTGTTTTAGCCTCTGGAGTACCTGGGATTACAGGCATGCGCCACCACGCCCAGCTAATTTTTGTTTTTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGCGCCACGCCCAGCCGTGATCTGGGTTTTAACAAGCCCTCCAGGTGATTCTGTTGCAGCTAATGTTGAGATCCTCTGCTCTAATTTTATCTTTTTTAATGGTTGCATTATATTTCATGCTGCAGATATGCCAGAATTCTTTAGCTATACCCAATGGGGGCATTCACTTAGATTCGTTTTTTTGCTGCTATCAATAATGCTCCACTAAACACCCTTGTGCTATATTTTTATATATGAATGCTTCTATTTCTGGGGGCTAGAGTCCCAGGAGGTGGATTGCTAGGTTGAATGCTATATGGATTTTCAGTTTTATAGATGTTGCCAGATTGCTTTCCACAAAGGCTGTGTCACCTCACATTTCTACCAGCCATGTATGAAAGTACCCATTTCCTTCCAGGCATAGGTGCTACTGCTCTTTTAAAATTGTTCCTGTCTTGCTGGGCACGGTGGCTCATACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCTAGTCTTTACTAAAAACACAGAAATTAGCTGGGCATGGTGGCGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCCAGAGAATTGCTTGAACCCAGCAGGCAGAGGTTGTGGTGAGCCGAGATCGCGCCACTACACTCCAGCCTGGGCGACAAGAGTGAAACTCTGTCTCAAAAAAAAAAACAAAAAAATTGTTCCTGTCTTGATGAATGTAAAGTACATCGTTATTTTAATTTGCATGTCCCTTACTATAGGTGAATTTAACCATTTCATTTGTCATAGTTTGATTGGCTTCTCTCTGATTGCTATTCATATGCTTTGTCCATGTTTCTATTTGGTTATTTGTTCTTTTCCCATCAACTTATAAAAACTCCATGTAAGTATTAATCTTCTAAATGTTATCTTTGTTACAAATTTTTTTCCAATTTTATTTTTTGGCTGTTGAATTTGTGGTCCTCAAACTTTAGCGATGTATCAGAATCATGTGGAAAGCTTATTGAAAACTGGATTGCTGGGCACCACACCCAGTTCCTGGTTCAGTAAGATGGGTGGAAGGCAAGAATTTGCATGTCCAACAAGTTCCCAGGTGATGCTGCTGCCACTGCTGCTGGTCCAGGGACCATAGTGTGGGAATCACTAGTTTTTGCCATATAAAAGTTTAAAATTTGGCCAGGTGTGATGGCTCATGCCTGAAATCCCAGCAGTTTGGGAGGCAGAGGCAGGCAGATCACTTGAGCTCAGGAGTTCGAGACCAGCCTGGGCAACATGGCAAAACCCCTGTCCCTACAAAAAATACAAAAATTAGCCAGGTGAGGTGGTGCGTGCCTGTAATCCCAGTAACTCAGGAGGCTGAGGTGGGAGAATTGCTTGAGCCCGGAGATTGAGGTTTCAGTGAGCTGTGATCGCGCCACTGTACTTCATCCTGTGCAACAGAGCAAGACCATGTCTCAAAAAAAAAAAAAAAAAGTTTAAAATTTCTATATAGTTAAATTTGTCTTTTTCTTTTATAAATAACTTTTGAGGCCAGGCACGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCAGACTAACACAGTGAAACGCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGTGGGCACCTGTAGTCCCAGCTGCTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGAGAGGTGAAGCTTGCAGTAAGCCGAGATCGCGCCACTGCACTCCAGCCTCGGCGACAGAGTGAGACTCTGTCTCAAAAAATAAATAAATAAATAACTTTTGAACTTCTTGTCTTTTTTTTTTTTTTTTTTGTGACCGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTACAATGGACCAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATATGCCACCATGCCTGGGTAATTTTGTATGTTTAGTAGAGATGGGGTTTCTCTGTGTTGGTCAGGCTGGTCTCAAACTCCCAACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGCGCCCGGCTAAATTTCTTGTCTTAATTTAAAAAAGTATTCTCTGTCTCTATACTGTGTATCTGGTCTCTAAGATTTTATGTTTTACATTTACATTTAAATGTGTAATCATCAGGAATTTATCTTTGTGTATGGCATAAGATAGGAGTCTGTTTTCTTTCAGAGTGTTAACCAGTTGGCCTAGCGCCAAATTATTAAATAATCTCACTTTTTGGATTATTTAATCCAATATTGGATTATTTCAAATCCAATTTTAATTGAAATGTCCTTGCAACCCATTATATACTTCTGTGTCTATGGATTTGCCTATTCTGGATATAATAGGCAAAGCTCAGAAAATTGTATGATTGTGTGATTACACAAAAGTAAAATCATACAATATGATTTTTTTGCGTCTGGCTTCTTTCACTTAGTATGTTTTCAAGATGTATCCATGTTGTAGCATTTATCAGTACTTCATTCTTTTTATAGCTGAATAATATTCCATTATATGGCTATACCACATTTTGTTTATCCAGTTATCAATTGGTCATCATTTAAGTTGTTTCCTTTTGATCATTATGAATAATACTGCTATAAACATTGATATACAAGTTTTTGTGTGGACATATGTTTTCATTTCACTTGGATATATACCTAGGAGTGGAATTGCTGGGCTACATAGTAACTCTATATTTAACTTTTTGAGGAACTGCCAAAGCATTTTCCAGAGTAGCTGCACCATTTTACATTCCCACCAGTGGCAGTGTAAAACACTTGTTATTCTATCCTTTTAATTGTAGTCATGCTGGCCTTGCACTGTGGCTCATACCTGTAATCCCAGCACTGTGGGAGGCTGAGGTGGGCGGATCACTTGAGCTGAGGAGTTCAAGACTAGCCTGGGCAACATGGCGAAACCCCGTCTCTACAAAAAATACAAAAAGTAGCCAGGTGTGGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCATATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTGAAAATACAAAAGCAAAATTAGCCGGGCATGGTGGCGGGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGAATGGTGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCTGCCACTGCACTCCAGCTTGGGTGACAGAGCAAGATCCTGTCTCAAAAAAAAAAAGTAGCCAGGTGTGGTGGTGCACACCTGTAGTCCCGCTACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAATAGAAATAATAATTGTAGCCATCCTAATAGGTATGAAGTGGTATCCCATTGTGGTTTTGATTTGCATTTGAACCTCTTTCATGTACTCATTGGCTATTTGTATATCTTCTTAGAGAGATATCTTTCCAAACCCTTTTTTTTTTTTACTAATTTTTTTAGTGACAGGGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGTCAGAATCATAGCTCACTATAATTTTGAACTCCTTTTTGCCCTTTTTTAAACTGGATTATTTATTGAGTTTTAAGAATTGCTAATATTTTAAAAACAGTTTTTCTTAATGTTTCTATTTTGAGTGGGGCATTCAAACTTTTCTGAGCTTTGTTGAACATTATTAGATCTGTGGGCTGAATAATAGTTTCCAGGCAATTAACATTTTTGTTTTTGCTTGTTTTAG
Seq C2 exon
AGAGTGACTCAGACATCTCCTCTACAAGTACCTAACCCATCCTGGATGCACCACCATTCATACCTCATGCAGCCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067-RBMS2:NM_002898:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.423
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)