DreINT0125500 @ danRer10
Intron Retention
Gene
ENSDARG00000044179 | rbms2a
Description
RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]
Coordinates
chr11:1909304-1911616:+
Coord C1 exon
chr11:1909304-1909397
Coord A exon
chr11:1909398-1911565
Coord C2 exon
chr11:1911566-1911616
Length
2168 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
ATATTTGTTTTGATCCACAGATG
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTTTTATTCATCGCCGTACAGCATTGGTCCAAACCGAATGATCGCTCAGACGTCTCTGTCTCCATACATGCCTTCACAAGTTCCGTCCTACCAG
Seq A exon
GTCAGATCATTCACATCAGCATTACAGCAGCTCTCCCCAGCTGTGTTTCCATCCAAAGATTAGTGTGCAAAACTGGAATATCGCATTGGATATTTGCAAATAAAGCAGCGTTTACATCCAGTGAGTCGAAGAGAATAAAATCCTCACTTTCTCATAAACTGGAGCAGATATCAGTCAGAGTAGTGGAGTTTGATGCATTGGGATTTGCCACTGTGGTGTTTTTCTTCTCTAATAAATGAGCACCGGGAGGAGGCCTCGGGAAAACCCAGGACATGCTGGAGGGACTATGACTCTCAGCTGGCCTGGGAATGCCTCGGGATCCCCCCGGAGGAGCTGGAGCAAGTGTCTGGGGAGAGGGAAGTCTAGGGTTCTCTCCTAAAAGTAGATGAAAATGAGATGAGATATTGGTTCAAAAATGAGTAGCCCAAATGTATATGTTAGGGAAATATTATATAACATTTTCAAAAATAGGAAAAATTAAGAGAAGCAAAAAATATATAGTTTTGTTGCGATATTCATTTTCAATAGGGGTGTACTCGTATATGCTGAGCACTGTATATGAGCAATGCCTTGCAAATGTCAACTTTGCCATGAAAAAAATTACGTTTTTACCAAAATACTGAAACCGTTTGTGGGTTTTTTGTGTAAGAAAGTATTTTACAGTGCTTTAAAATACTCAAAAATGCATCTGTCAATGTTTTCAAACTAAAATATTTCACATTTCACATCTGTCATCAGGCCCGGATTGCTTAATCGGGAGGACCAGGAGAATTCCCAGTGGGCCGGTCCGTTTTTTGGCCGCGAGGGCCGGTGTCCGTAGCTGCTTGCACTCTCTGCAGTCGCACTTTTTTCATTTATTTAATTATTTGACCTTAGCCTTACTTTTTATTCATTATTTCGCCGCAGCTCCGCTCTTTTTATTTATTTTCTCGCAGCCCCGTAAGCAAAATGCAGCCTGCAGGTTAATGATGATGTAACTATCATCCAACCCCAAACAGCGGCACCTTAGTGACTATAAGAATTCGAATAATTAATATTAATGATTATTACTCCTGCTCAATGAAAATCAGATGATTACNNNNNNNNNNGAATTCCCAGTGGGCCGGTCCGTTTTTTGGCCGCGAGGGCCGGTGTCCGTAGCTGCTTGCACTCTCTGCAGTCGCACTTTTTTCATTTATTTAATTATTTGACCTTAGCCTTACTTTTTATTCATTATTTCGCCGCAGCTCCGCTCTTTTTATTTATTTTCTCGCAGCCCCGTAAGCAAAATGCAGCCTGCAGGTTAATGATGATGTAACTATCATCCAACCCCAAACAGCGGCACCTTAGTGACTATAAGAATTCGAATAATTAATATTAATGATTATTACTCCTGCTCAATGAAAATCAGATGATTACATTAATAAATCCGACACAACTTTGGCACTATCGCAACAGTGCTATTGTGGTCGAGTGGTCAGCACGTTACGTTGCCACATGGCAGACCGGTGTTCGAACCTTACTAGAGAAATCATTATCATTTCTTCTTTTTTTTAATTATATTTATTGTTCAGACATTTAATACTGTTAGGGTTGTTGAATATTTGAAATTCTAAAGCAACTGTTTTCTTGAAAAAGACGTGATCGTGTCATTAGAAGCTGAATTGGAAATATAGTCAGTCGTGAACTGAGGTGGGCCGGTCTGAGACTTGAAACTCCAGGGCTGAAAAGGAGTCGCACTCCGGCCCTGTGTGTCACATTCATAACGGAGGGATGTCACATCCATAACAAAGCTTTTTCCTCATAAATGTGAAAATATTAAATAAAAATGAAGTCAGTCATGGTTGTATTATAAAGAGAACTCTTATCCTTTTGATTATCATCGTTTCTTTTGGGTTGTGCAGTTTAATTCACATAATCTCTACAAAGTATGTTGTATACTGTAAACCTGGAGACTTTTTTTGTCACATCCACAACGCTTGTTTATTTTCCTCATTTAAAGTACAAAACATGTTTATAGATTGATTTTTCTGCTCTCTTTACTCTGTGGTCAGTTGTTAATATATAAACAGAAGTTTCAATATAATGCTAACGTATACTTTCCATGTGAATTTATCTTTTGTGTTTTTGCTGCAAATGTCGCATCCATAACGCTGGAATCGCTCATATATATTTGTTTTGATCCACAG
Seq C2 exon
ATGCACAGCCCGTCCTGGATGCATCATCAGTCGTACCTCATGCAGCCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044179:ENSDART00000065470:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]