HsaINT0138664 @ hg19
Intron Retention
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:9907]
Coordinates
chr2:161137825-161141379:-
Coord C1 exon
chr2:161141286-161141379
Coord A exon
chr2:161137876-161141285
Coord C2 exon
chr2:161137825-161137875
Length
3410 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
CAAAATCCTCCCTTTTCTAGGTG
3' ss Score
10.67
Exon sequences
Seq C1 exon
ATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATATTGCATCTCCTGTATCTGCCTACCAG
Seq A exon
GTTTGTACCTTTAGGATTCGTCAGCAGTATAACCACTTGCGGACCATGAATCTCTGCTACATTTTTATGTGTCTTAAAATTTTGAGCGTTTATGAAATTTGAGTCAAATATTATGCAGCTTGGATACCCAATTTAGTATGAGCTGCTTTGTATTTGGCAGAGCAATTTATGTATAGGAGAATGTAAAGCAAAGGAAAATGTTTGTCAGTGGTCAGTCCTTGGAATCATAGCATTTTGGATTGGAATGAACCCAAACACTTCCTTCACCAAGGGGCCCTGCTTTTGGACACCATGTGTCCCAAAAATTGAAACTTAAGATAATTGCCGTTAGATATAATACAGAATAGGTGTGTACCCTTGCTTTTGTTTATTCTTCAGCAGGAACTGATAAAAGAACAAGTATAAACATGGTAATACATAAAGATGTGTCTCTAGTAGGTAGCATTAAGTGAGCAATGCAGCTGACATTTGAGGTAAAAATATAAAAGCAAAAAGGTGACTTCCTGTTTAGGTTAAGTGAGGAGGCTTTACCTTAAAATAAATTCCCAACTTAGCAACAAAAACTCTTGAAATGTCTTGTATTTCAAGATTTGATTTGATTTTAATGCAAAGGTAGCTCCTGTCCGCCATGAACCCAGTAGTGTACATGCATTTCTCCTCCTGTGTCAGAAAACCTCTAACAGGATTACTTCCTGGACCCAGATAGGAACCTTATAATGGAGTTCAGTTGCAGACATGTGGGAGCAGAGTTCCCTTTTGTTGACCATCAGGATCCTGTGTGACTAAATTTTTGTGTATTCTTGATTTTAAAACAATTGAATTAGATGTTGTAGTCCTAATTTCTGGGGTTAGAGGACTACAATATGTAATCTAATAGTTGTGTTATTTTAACTTCTATAAGCCTCAGTTTCCTCATCTTTAAAATGGGGATAATAATAGTTTCTATCTCATAGGCTTGAGAGAATTATGAAAACCAAATGAGACTGTATAAAGAGCCCAGCCAAGGACCTCACATATCATTATCACTCAGTTAATGTTAGCTATGATTATTATCATTAATATGCATGATTAGGTGGCTGATAATAAGAGTATATTAGTTATACGTTTAAATAATGAATTGGCCAACATAAGCAATGTCATATAACTAATTCTGCCTAAAAACATAAAAATGGTTTTGAATAACAGAAGTGATTAGATACGCTAAAACTGAGGATTGGCATTATCATTCACAGTCTCCTATGCTTCTAGGCTCTTACAGCCTCCTTTCCCTGAGTTGTCACTCGTTTTCTTTTCTTTTTTCTCTCTGGGTTCTTATGTTACTTATTCTGGTGCTTCATTCTGCTGGGCGTAGTATTGACTAATTTAATGCCTCTTTAGTTGTTTTGGATTTAGGATTCCTATCCTTTCTTTGACTGTATAAGACTCAGTGAGATCTGCTCTAGTGCACTTCCCTAATTAACAATTCATGTGTCTGCTATGAAAAGGTAGTCTTTCTTAACTGTCTGAACTTGGAAACCTCTGTCATTTATATGTCACTGAAAATAGGGGCAAGTGTAAGTTATTCTCAGGCAAATGAAAGGTTGTAAGTATTAATTTGAATTTATGTTGCTATAGATATTACAGCTATTAACACATTTCTCCAACACCTCTTTTTCCCTCTTATAATATAAAACCAGTGTGCATTTGGCCACAGAACCATTTTGTACAATAAAAATTAGGAGATCTGTGTCAGTAATAGATTTGATATAGCTAACTAGAAATAACATATTATTTCAGAGGCCTTATTTCCTCTCCTGGGCATTCTGTATTTCTCTAAGATACATATGGAATTTCATTGCATTGCCTGACACTCGGTGCCATAGCCTCAAAGACTGATTTTTAACTACATAAGTTCAGGGACCTAGTAGGGTCAGTGGATGAGCTTTAAGTGATCTGTGACTCCTTAAGTTGTTTGCAAAATGTTGCTTGTGTGTGTGCAATTAAGTGGGGAAAAATGTTCTATTTCCCTAATTAGGTTTTCAGAGGGCTCCATGACCCTAAAGAGGTTAAGAACCAATAGTAAAGAGTTTACAAAACATTATTATTCCCATTTTATAATTAGAAAATTGAGGAATAGAAATTGACAGCAGCTGATTTGCTGCTTAAGAAAGAAAATTAGATGTCATAGTTCCCTAATCCTGTAATGCTATAAGCTATTAGATTATTAAGACCACTGAAGCATATAAAAAATGGGGGCATCTGGCCCAAATTAGGGTCTGTAGGGAGTTGTTTGCCTTCCCATCATATATCCAGTGAGGGCCCTGCACTCATGTTGGAGTGGGCCTTTCTCCACTAAACCACCATAAGCTTATGCAATTGGATTTGAGAAATTGGCAGCTGCAAGAAACCACCAACCCCAATGGGGAAAGGCTACAGTCCAGATAACTGAAATGTTAACAAGGCAGAAGCACTTAACTTTGGTCTGCCTTAGGTGGCAAAGGAAACCAGAGAAAACAAGTATCGGGGCTCTGCTATCAAGGTAAATCGCAATACATTCTTCCCCCATGACTCTTCCCCATATCCTCTCTGTTGAACCTCTGAAGTTAACAATAGGGGATAAAATGCAGGAGGGTTTTGTTGTTAAGAATTGGAAACTGAAACTTAATAAAATTACTTAGACTCTGGAAAGCTCTGGGCATCAAGAAATGGGCTGATATGTTTTTCTCTTGAGTGGCAGACTACACATGCTTTCTTTCCTGCCACAAAACCTGACTCTCACATCTATTTCTCAATTCAGAGGGTCTACTGTGTGGATGCCCATTTGACTGTAGATGTCAAAATCTAGTTACTGAAGTTTAATTTCCTTAATCTGAATTTCAGATTTTTATTTTCTGCACTAAGTAGAAATTGTTGACCACAATACAAGATTTCTAAAATTAATGTCCTAGATATGAAAGAGAAATTGAATTTGGTTTTTTGTATTAAATAAGCACATACTTTAAGGGTTAGCTTCTAATAAGATGTGCTGGAATTAATCGTCATTCATCTGTAATTCTAAAGCACCTAGTTCATACCTTGATTGTTAACACTTTTCACTATTTGAGTTGTTGCTGTGTTTATCTCCCTTGCATAGATAGTAAATTTCTTGAGGGTGGGGCCCAGTCTGTTTCGCCTTTTTCTCTTTGTTGCCTGATACTCAACAATTACTTCTTGAGTGGGCAAATAGAAATTGTTTCTAAATAATCATTTCATCCTGTTCAGAGTGACCAGTTTGCCAAGAATTCTAACTGCCTTAATCTTTTTAATCATTGATAGTATTGTTTCCTTGTTTTCTTTCTGTAGATTTTTAACATGATTAAAAAGAGTTCTAAAGAAATAGGTAAGCTTTACAATGAAAATCAATATTTCTTTCAAAATCCTCCCTTTTCTAG
Seq C2 exon
GTGCAAAGTCCTTCGTGGATGCAACCTCAACCATATATTCTACAGCACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250-RBMS1:NM_016836:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)