HsaEX0052778 @ hg19
Exon Skipping
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:9907]
Coordinates
chr2:161137825-161141379:-
Coord C1 exon
chr2:161141286-161141379
Coord A exon
chr2:161138768-161138815
Coord C2 exon
chr2:161137825-161137875
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTAACTTTGGTCTGCCTTAGGTG
3' ss Score
9.56
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATATTGCATCTCCTGTATCTGCCTACCAG
Seq A exon
GTGGCAAAGGAAACCAGAGAAAACAAGTATCGGGGCTCTGCTATCAAG
Seq C2 exon
GTGCAAAGTCCTTCGTGGATGCAACCTCAACCATATATTCTACAGCACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.344 C2=0.058
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATACAGTATTGCTACAAACCGA
R:
GGGTGCTGTAGAATATATGGTTGAGG
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)