HsaEX0052778 @ hg38
Exon Skipping
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160281353-160284868:-
Coord C1 exon
chr2:160284775-160284868
Coord A exon
chr2:160282257-160282304
Coord C2 exon
chr2:160281353-160281453
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTAACTTTGGTCTGCCTTAGGTG
3' ss Score
9.56
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATATTGCATCTCCTGTATCTGCCTACCAG
Seq A exon
GTGGCAAAGGAAACCAGAGAAAACAAGTATCGGGGCTCTGCTATCAAG
Seq C2 exon
ATTTTTAACATGATTAAAAAGAGTTCTAAAGAAATAGGTAAGCTTTACAATGAAAATCAATATTTCTTTCAAAATCCTCCCTTTTCTAGGTGCAAAGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250-'52-51,'52-50,54-51
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.562 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCAAACTTCTATTACACCCT
R:
CCTAGAAAAGGGAGGATTTTGAAAGA
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development