BtaEX0029976 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005180 | RBMS1
Description
Bos taurus RNA binding motif, single stranded interacting protein 1 (RBMS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035361]
Coordinates
chr2:36165953-36169459:+
Coord C1 exon
chr2:36165953-36166046
Coord A exon
chr2:36168483-36168530
Coord C2 exon
chr2:36169409-36169459
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTAACTTTGGTCTGCCTTAGGTG
3' ss Score
9.56
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATTACTCAAACTTCTATTACACCCTATATTGCGTCTCCTGTATCTGCCTACCAG
Seq A exon
GTGGCAAAGGAAACCAGAGAAAACAAGTATCGGGGCTCTGCTGTCAAG
Seq C2 exon
GTGCAAAGTCCTTCCTGGATGCAACCTCAACCATATATCCTACAGCACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005180_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.625 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000006826fB5823
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATACAGTATTGCTACAAACCGA
R:
AGGGTGCTGTAGGATATATGGTTGA
Band lengths:
133-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development