MmuEX0001426 @ mm9
Exon Skipping
Gene
ENSMUSG00000026940 | 4921530D09Rik
Description
RIKEN cDNA 4921530D09 gene [Source:MGI Symbol;Acc:MGI:1924308]
Coordinates
chr2:25469078-25471033:-
Coord C1 exon
chr2:25470929-25471033
Coord A exon
chr2:25469475-25469530
Coord C2 exon
chr2:25469078-25469200
Length
56 bp
Sequences
Splice sites
3' ss Seq
GCCCCTCTTTTCCACTTCAGATC
3' ss Score
11.02
5' ss Seq
GGGGTGGGT
5' ss Score
3.34
Exon sequences
Seq C1 exon
ATTATCCGCCAACTGGAGAACAACATTGAAAAGACGGTGATCAAGATCACCACCAGCCAGAACATCCACACGCTGTACAAAGTGCTGCTGGATTACCTGAAGAAG
Seq A exon
ATCAAAGATGTCCCCCAAGCAAACCCTCCTGGACTTTAGAGTTGGCCTTCGATGGG
Seq C2 exon
GTGCTGGCAGAGTACCCCACAGAGCTAGACAAGCTCCAGAACCTGGTGGCCAACTACTGCTCGGAGCTGTCAGACATGACAGTCATGTCCCAAGATGCCATGATGATTACTGATGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026940-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.073
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTACAAAGTGCTGCTGGA
R:
GGCATCTTGGGACATGACTGT
Band lengths:
133-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: