MmuALTD0005788-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34580899-34582822:-
Coord C1 exon
chr2:34582736-34582822
Coord A exon
chr2:34582622-34582735
Coord C2 exon
chr2:34580899-34581033
Length
114 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
3' ss Seq
ATCTCTTCCTGTTTCAACAGGGC
3' ss Score
11.1
Exon sequences
Seq C1 exon
GTTGGCCGCCTTTTGCAGCAGCTAGCAATGACTGGCACTGAAGAAGGAGATCCCCGGACCAAAAATAGCCTTGGAAAATTTGACAAA
Seq A exon
GTAGGAATGAGTGTTGTGTCATGAGAAATACGGTTCGTAGACTATAAGATGTCCAGGAGTGCTAACCCACACCTGTAATCTCAGTTGAGGTGGGAGGATTGCCTTGAGTCCAAG
Seq C2 exon
GGCTGTGTCGCTGCTTTCCTTGATGTTGTAATTGGGGGCCGTGCAGTGGAGACTCCGCCAATGTCCTCTGTTAATCTTCTGGAAGGCTTGAGCAGAACTGTGGTGTATATAAGTTACAGTCAGCTTATTACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867-14-15,15-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(4.5=31.0)
A:
NA
C2:
PF153241=TALPID3=PU(0.5=2.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCGCCTTTTGCAG
R:
GCTGACTGTAACTTATATACACCACA
Band lengths:
211-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: