MmuINT0057675 @ mm9
Intron Retention
Gene
ENSMUSG00000015085 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:MGI Symbol;Acc:MGI:1096863]
Coordinates
chr2:25254802-25255256:+
Coord C1 exon
chr2:25254802-25255056
Coord A exon
chr2:25255057-25255136
Coord C2 exon
chr2:25255137-25255256
Length
80 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
TGCACACTCTTCTCCCACAGGCC
3' ss Score
11.38
Exon sequences
Seq C1 exon
ATCCATCGCTTCCACCCCTGCTGGCCAAAGGGCTACTCCACCCAAGTGCTGCTCCGGGAAGTCTACCAGTCTCCATGCACTATGGGTCAGCGTCCCCAGACCTTCAACAGCAGTGCCACTGTCAGCCTGTCAGGGACCAGCAACGCTGCCCTCTGTCGTGACCTCGTCTCTGGGCTCTTCAATATCTCCTCCTGTCCCTTTTCCCAATGCTCCTTCAATGGGGTTTTCCAGCCTCCCGTGGCTGGGAACTTCATA
Seq A exon
GTGAGTCCGGGTGGATGGATGTGGGGACGGGAGACCCTAAGCATGTGGTGACAGGGTGACTGCACACTCTTCTCCCACAG
Seq C2 exon
GCCTTTTCTGCTTTCTACTATACTGTAGACTTCCTGAAGACAGTGATGGGGCTGCCTGTGGGAACCCTGAAGCAGCTGGAGGATGCCACAGAGACCACCTGCAACCAGACCTGGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015085-Entpd2:NM_009849:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(19.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCTGTCCCTTTTCCCA
R:
TCTGGTTGCAGGTGGTCTCTG
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: