RnoINT0055168 @ rn6
Intron Retention
Gene
ENSRNOG00000013102 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:RGD Symbol;Acc:69266]
Coordinates
chr3:2621199-2621655:+
Coord C1 exon
chr3:2621199-2621453
Coord A exon
chr3:2621454-2621535
Coord C2 exon
chr3:2621536-2621655
Length
82 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
CACGCCCCTTTCTCCCACAGGCC
3' ss Score
12.87
Exon sequences
Seq C1 exon
ATCCATCGCTTCCACCCCTGCTGGCCAAAGGGCTACTCTACCCAAGTGCTGCTCCAGGAAGTCTACCAGTCGCCATGCACGATGGGTCAGCGTCCCCGGGCCTTCAATGGCAGTGCCATCGTCAGCCTGTCAGGAACCAGCAATGCTACCCTGTGTCGTGACCTCGTCTCTCGGCTCTTCAACATCTCCTCCTGCCCCTTTTCCCAATGCTCCTTCAATGGGGTCTTCCAGCCTCCCGTGGCTGGAAACTTCATA
Seq A exon
GTGAGTCTGGGTGGCTGGATGTGGGGACGGGAGACCCTAAGCATGCAGTGACATGGTGACTGCACGCCCCTTTCTCCCACAG
Seq C2 exon
GCCTTTTCTGCTTTCTACTATACTGTGGACTTCCTGACAACAGTGATGGGGCTGCCTGTGGGAACCCTGAAGCAGCTGGAGGAAGCCACAGAGATCACCTGCAACCAGACATGGACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013102:ENSRNOT00000017829:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(19.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTCCTCCTGCCCCTTTT
R:
GCAGGTGATCTCTGTGGCTTC
Band lengths:
176-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]