BtaINT0056496 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048125 | ENTPD2
Description
Bos taurus ectonucleoside triphosphate diphosphohydrolase 2 (ENTPD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001105648]
Coordinates
chr11:106186972-106187431:+
Coord C1 exon
chr11:106186972-106187226
Coord A exon
chr11:106187227-106187311
Coord C2 exon
chr11:106187312-106187431
Length
85 bp
Sequences
Splice sites
5' ss Seq
ATCGTGAGT
5' ss Score
8.88
3' ss Seq
TGACTGTACCCGCGTTCCAGGCC
3' ss Score
7.73
Exon sequences
Seq C1 exon
ACCCACGGGTCCCACCCCTGCTGGCCACGGGGCTATTCCACTCACGTGATGCTCTGGGATGTCTACGAGTCGCCCTGTACTGCTGCCCAGCGGCCCCAGGCCTTCAACAGGAGCACCAGGGTCAGCCTGGCGGGCAGCAGTGACCCTGCCCTATGCCGCAGCCTCGTCTCCCAGCTCTTTAACTCCTCCTCCTGCCACTTCTCCAGATGCTCCTTCAACGGAGTCTTCCAGCCCCCTGTGGCTGGGAAGTTTATC
Seq A exon
GTGAGTCCAGAGGACAGGAAGGTGGGGGGCCCGTGCCCTGAGGTGCCTGGGGTCTGGTCACAGTGTGACTGTACCCGCGTTCCAG
Seq C2 exon
GCCTTCTCTGCTTTCTTCTACACGATGGACTTCCTGAGAACGGTGATGGGGCTGCCCGTGGCAACTCTGCAGCAACTAGAGGGGGCTGTAGTCACCCTCTGCAACCAGACATGGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048125:ENSBTAT00000063714:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(19.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGCCACTTCTCCAGAT
R:
TGGTTGCAGAGGGTGACTACA
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development