GgaINT0125662 @ galGal4
Intron Retention
Gene
ENSGALG00000009058 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 precursor [Source:RefSeq peptide;Acc:NP_990285]
Coordinates
chr17:407481-408055:+
Coord C1 exon
chr17:407481-407747
Coord A exon
chr17:407748-407935
Coord C2 exon
chr17:407936-408055
Length
188 bp
Sequences
Splice sites
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
3' ss Seq
TGCTTCCATTCCTCCATTAGGCC
3' ss Score
7.66
Exon sequences
Seq C1 exon
GCTGAGAACTACCAAGAAACTGTCGCCAATCCTTGCTGGCCCACGGGCTACCGCAAGAGTCTGTCACTGAGCAGCATCTATGACAGCCCCTGCACGGAGAAGGAGCGGCCCGGCCTTCCCCTCAACACCACCGTTGTCGTGTCCGGTACCGGGAATGGGAACCTCTGTGCTGTGCACGTCAACAAGCTCTTTGACTTCACCAGCTGCTCCTTCTCCCACTGCTCCTTCGATGGTGTTTTCCAACCTGAGGTTTCAGGGAACTTCATC
Seq A exon
GTAAGTCCCAGCACAGAGCAGGGTGGTGGGCTGGCCGTGTGGAGGGCCCAGGTGTCACATGGCAGCAAAGCCGGACTGCAGCTCTGCCAGGGTGTTTGCTTGTGCCCACCACAGTGGTTACAGCAGCTCTCTATGGTTCAAGAGTTTGCTCCCAGCTTGTCCTACAGCTGCTTCCATTCCTCCATTAG
Seq C2 exon
GCCTTCTCTGCCTTCTTCTACACGGTGGACTTCATCCGCACAGTGATGGAGAGACCCGTGCACTCGCCCAGTGACCTGAAGGACGCTGCTGAGACCATCTGTGCCACCAGCTGGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058:ENSGALT00000014744:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.3=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCGCAAGAGTCTGTCAC
R:
TCCACCGTGTAGAAGAAGGCA
Band lengths:
250-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]