GgaINT0124640 @ galGal3
Intron Retention
Gene
ENSGALG00000008932 | F1NV62_CHICK
Description
NA
Coordinates
chr17:1309940-1310819:-
Coord C1 exon
chr17:1310556-1310819
Coord A exon
chr17:1310051-1310555
Coord C2 exon
chr17:1309940-1310050
Length
505 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGG
5' ss Score
3.89
3' ss Seq
CCATCACTCTTCTTCCCCAGGCC
3' ss Score
10.28
Exon sequences
Seq C1 exon
GACGGCTCGTATGTCCAGAATATATCACACCCCTGCTACCCCAAGGGATACCAGGAGAACATCACCATAGCAGAGATCTACGACAGTCCCTGTGTCCCCACCCCAAGCATGCTCAGCCCTGCACAGATCCTCACAGTAACAGGGACAGGGAGCCCAGCGGCGTGCCGCACTGCCATCCTGAAGCTCTTCAACTTCACCTGTGGGGCCAACAGGACGTGTGGCTTCGACGGGGTCTATCAGCCGCCCGTGCGGGGACAGTTCTTT
Seq A exon
GTAAGGAGCCTCTGACCGTGTGGTGCTGGTGTGGGTGTGGGGATGGAGGGTAGAAGTCTTCTCTACTGTTGGTTGTGAGAGGAGGAGGCAAGAGAGGGGACTCCAAAGCTGGTCCCATCTGCAAATCTCTGCCCCTAAGCTGGAAGGTGGATTCTGCCTTATGCAGTGTTCCAGTCCTCCCTGAGGGAAATGGGAAGATCTTGTCCATGAGGAACAAGTCTGATTTGGCAGGGCTCCCAAGTACAAGCAGAAGCCCCAAGGCTTGTCCATGACCTCCAAGTCTTGTAGACTGGCAGAGGGTCCACTCGGCCAGGCTTTGCTCTAAGATCTGGCCCAAGAGGTTGCAGTGAGATACTCTGCCACAGGCTCAGCCAGCCCTCCTAATCTGGTACCCCACTTGTCTGAGGCAGGGATGGCAGTGCTGACCCCAAGCCCAGAGGTGCAGGGAGGCCTTCCTTTGGGTGAGGAGGGAGATGTAGTTTTTACCATCACTCTTCTTCCCCAG
Seq C2 exon
GCCTTTGCTGGGTTCTACTACACCTTCTCCTTCCTGAACCTGACCGGCCAGCAGTCTCTAAGCCATGTCAATGCCACAGTCTGGGACTTCTGCAACAAGAACTGGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932:ENSGALT00000014518:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(20.4=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCACACCCCTGCTACCCC
R:
CGGACCAGTTCTTGTTGCAGA
Band lengths:
352-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]